Gene annotation
| Transcriptome id | Sobic.007G132000.2,Sobic.007G132000.3,Sobic.007G132000.1 |
|---|---|
| Synonym | Sb07g020820, KAN, KAN1 |
| Functional annotation | MYB family transcription factor, putative, expressed |
| UniProt | A0A1B6PHM7 , A0A1Z5R9M0 |
| Pfam | PF00249 |
| Panther DB | PTHR31496 PTHR31496:SF8 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G16560 : Homeodomain-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g33050.1 : MYB family transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a055113 , Zm00025a031086 , Zm00025a005995 , Zm00025a046883 |
| Brachypodium | KQJ98331 , KQK13023 , KQJ90138 |
| Barley | HORVU5Hr1G060310.1 , HORVU5Hr1G060310.3 , HORVU5Hr1G060310.2 , HORVU5Hr1G060310.4 , HORVU5Hr1G060310.7 , HORVU5Hr1G060310.28 , HORVU5Hr1G060310.22 , HORVU5Hr1G060310.23 , HORVU5Hr1G060310.25 , HORVU5Hr1G060310.27 , HORVU5Hr1G097900.9 , HORVU5Hr1G097900.4 , HORVU5Hr1G097900.2 , HORVU5Hr1G097900.3 , HORVU5Hr1G097900.1 , HORVU5Hr1G060310.18 , HORVU5Hr1G060310.17 , HORVU5Hr1G060310.16 , HORVU5Hr1G097900.14 , HORVU5Hr1G097900.16 , HORVU5Hr1G097900.17 , HORVU5Hr1G097900.10 , HORVU5Hr1G060310.12 |
| Wheat | TraesCS5D02G209600 , TraesCS5B02G201900 , TraesCS5A02G203200 , TraesCS5A02G203200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G211500 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 2 | Sobic.003G305000 | Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 3 | Sobic.001G536800 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 4 | Sobic.001G010100 | ankyrin repeat domain containing protein, expressed | - |
| 5 | Sobic.009G196800 | cytochrome P450, putative, expressed | - |
| 6 | Sobic.009G085500 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 7 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 9 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 10 | Sobic.001G069000 | ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 11 | Sobic.010G096300 | -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed | - |
| 12 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 13 | Sobic.001G233400 | Citrate transporter protein, putative, expressed | - |
| 14 | Sobic.003G137100 | protoporphyrinogen oxidase, chloroplast precursor, putative, expressed | K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase |
| 15 | Sobic.009G125400 | FZL, putative, expressed | - |
| 16 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 17 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 18 | Sobic.010G109200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed | - |
| 19 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 20 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
Gene co-expression network
Octagon: transcription factors
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