Gene annotation
Transcriptome id Sobic.010G096300.1
Synonym SbGLK1, GLK1;Sorghum bicolor Golded like gene 1, GPRI1, GLK1;Sorghum bicolor GOLDEN2-LIKE, GLK1, Sorghum bicolor Golded like gene 1, ATGLK1, Sb10g008400
Functional annotation - (PubMedID : 22968911)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition (PubMedID : 22968911)
myb-like DNA-binding domain containing protein, expressed
UniProt C5Z7F7
Pfam PF00249
Panther DB PTHR31312 PTHR31312:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20570 : GBF\'s pro-rich region-interacting factor 1
RAP-DB (Rice) LOC_Os06g24070.1 : myb-like DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049429
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G096300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
3 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
4 Sobic.001G233400 Citrate transporter protein, putative, expressed -
5 Sobic.003G435800 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed K13600: chlorophyllide a oxygenase
6 Sobic.007G223500 expressed protein -
7 Sobic.001G035800 heavy metal-associated domain containing protein, expressed -
8 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
9 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
10 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
11 Sobic.002G033800 expressed protein -
12 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
13 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
14 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
15 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
16 Sobic.001G391900 nifU, putative, expressed -
17 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
19 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -


Gene co-expression network
sample Sobic010G096300 Sobic010G096300 Sobic006G103400 Sobic006G103400 Sobic010G096300--Sobic006G103400 Sobic004G227200 Sobic004G227200 Sobic010G096300--Sobic004G227200 Sobic006G093900 Sobic006G093900 Sobic010G096300--Sobic006G093900 Sobic001G233400 Sobic001G233400 Sobic010G096300--Sobic001G233400 Sobic003G435800 Sobic003G435800 Sobic010G096300--Sobic003G435800 Sobic007G223500 Sobic007G223500 Sobic010G096300--Sobic007G223500 Sobic001G035800 Sobic001G035800 Sobic010G096300--Sobic001G035800 Sobic001G069000 Sobic001G069000 Sobic010G096300--Sobic001G069000 Sobic009G164300 Sobic009G164300 Sobic010G096300--Sobic009G164300 Sobic004G343300 Sobic004G343300 Sobic006G103400--Sobic004G343300 Sobic004G023200 Sobic004G023200 Sobic006G103400--Sobic004G023200 Sobic004G175500 Sobic004G175500 Sobic006G103400--Sobic004G175500 Sobic003G197400 Sobic003G197400 Sobic006G103400--Sobic003G197400 Sobic002G033800 Sobic002G033800 Sobic006G103400--Sobic002G033800 Sobic004G249800 Sobic004G249800 Sobic006G103400--Sobic004G249800 Sobic001G041800 Sobic001G041800 Sobic006G103400--Sobic001G041800 Sobic010G241000 Sobic010G241000 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic004G227200--Sobic007G223500 Sobic004G227200--Sobic006G093900 Sobic002G316700 Sobic002G316700 Sobic004G227200--Sobic002G316700 Sobic004G227200--Sobic001G035800 Sobic009G143100 Sobic009G143100 Sobic004G227200--Sobic009G143100 Sobic001G168800 Sobic001G168800 Sobic004G227200--Sobic001G168800 Sobic004G227200--Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic004G227200--Sobic003G387800 Sobic002G030500 Sobic002G030500 Sobic004G227200--Sobic002G030500 Sobic007G004800 Sobic007G004800 Sobic006G093900--Sobic007G004800 Sobic009G140600 Sobic009G140600 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic006G093900--Sobic004G227200 Sobic001G519800 Sobic001G519800 Sobic006G093900--Sobic001G519800 Sobic009G043000 Sobic009G043000 Sobic006G093900--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic006G093900--Sobic001G102800 Sobic008G102000 Sobic008G102000 Sobic006G093900--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic006G093900--Sobic003G002300 Sobic001G233400--Sobic004G023200 Sobic001G233400--Sobic006G103400 Sobic001G536800 Sobic001G536800 Sobic001G233400--Sobic001G536800 Sobic003G137100 Sobic003G137100 Sobic001G233400--Sobic003G137100 Sobic002G385700 Sobic002G385700 Sobic001G233400--Sobic002G385700 Sobic009G196800 Sobic009G196800 Sobic001G233400--Sobic009G196800 Sobic001G233400--Sobic001G069000 Sobic001G233400--Sobic010G096300 Sobic006G060200 Sobic006G060200 Sobic001G233400--Sobic006G060200 Sobic007G207800 Sobic007G207800 Sobic003G435800--Sobic007G207800 Sobic003G435800--Sobic003G387800 Sobic003G435800--Sobic007G223500 Sobic003G435800--Sobic002G030500 Sobic008G134800 Sobic008G134800 Sobic003G435800--Sobic008G134800 Sobic001G425400 Sobic001G425400 Sobic003G435800--Sobic001G425400 Sobic003G435800--Sobic004G175500 Sobic003G435800--Sobic002G316700 Sobic003G435800--Sobic004G249800 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic007G223500--Sobic001G425400 Sobic007G071500 Sobic007G071500 Sobic007G223500--Sobic007G071500 Sobic007G223500--Sobic003G387800 Sobic008G066100 Sobic008G066100 Sobic007G223500--Sobic008G066100 Sobic009G055800 Sobic009G055800 Sobic001G035800--Sobic009G055800 Sobic001G417200 Sobic001G417200 Sobic001G035800--Sobic001G417200 Sobic001G035800--Sobic004G227200 Sobic001G405700 Sobic001G405700 Sobic001G035800--Sobic001G405700 Sobic001G035800--Sobic006G093900 Sobic003G254600 Sobic003G254600 Sobic001G035800--Sobic003G254600 Sobic001G035800--Sobic003G412900 Sobic003G439000 Sobic003G439000 Sobic001G035800--Sobic003G439000 Sobic001G035800--Sobic001G168800 Sobic001G069000--Sobic003G412900 Sobic009G125400 Sobic009G125400 Sobic001G069000--Sobic009G125400 Sobic002G098800 Sobic002G098800 Sobic001G069000--Sobic002G098800 Sobic006G010900 Sobic006G010900 Sobic001G069000--Sobic006G010900 Sobic001G069000--Sobic001G536800 Sobic004G308700 Sobic004G308700 Sobic001G069000--Sobic004G308700 Sobic003G387100 Sobic003G387100 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic009G164300--Sobic007G223500 Sobic009G164300--Sobic001G425400 Sobic009G164300--Sobic002G316700 Sobic009G164300--Sobic009G055800 Sobic009G164300--Sobic009G143100 Sobic009G164300--Sobic004G175500 Sobic009G164300--Sobic008G066100 Sobic009G164300--Sobic008G134800 Sobic009G164300--Sobic003G387800
Octagon: transcription factors


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