Gene annotation
Transcriptome id Sobic.001G233400.3,Sobic.001G233400.2,Sobic.001G233400.1
Synonym Sb01g020450
Functional annotation Citrate transporter protein, putative, expressed
UniProt A0A1B6QKI0
Pfam PF02040
Panther DB PTHR10283 PTHR10283:SF88
NCBI CDD KOG2639; Sodium sulfate symporter and related arsenite permeases
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015700arsenite transport GO:0015105arsenite transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT1G02260 : Divalent ion symporter
RAP-DB (Rice) LOC_Os03g05390.2,LOC_Os03g05390.3,LOC_Os03g05390.1 : Citrate transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a032761 , Zm00025a017700 , Zm00025a006747 , Zm00025a000142 , Zm00025a003264
Brachypodium KQK24090 , KQJ96919 , KQJ97708 , KQK01440 , PNT78202 , PNT78201 , PNT78200 , KQK23658 , KQJ96920 , KQJ96921 , PNT78199 , PNT78198 , PNT67476
Barley HORVU1Hr1G037760.11 , HORVU4Hr1G079710.8 , HORVU4Hr1G079710.9 , HORVU4Hr1G079710.2 , HORVU4Hr1G079710.3 , HORVU4Hr1G079710.1 , HORVU4Hr1G079710.6 , HORVU4Hr1G079710.7 , HORVU4Hr1G079710.4 , HORVU4Hr1G079710.5 , HORVU1Hr1G037760.8 , HORVU1Hr1G037760.9 , HORVU6Hr1G092430.8 , HORVU6Hr1G092430.9 , HORVU6Hr1G092430.6 , HORVU1Hr1G037760.1 , HORVU6Hr1G092430.4 , HORVU6Hr1G092430.5 , HORVU6Hr1G092430.2 , HORVU6Hr1G092430.3 , HORVU1Hr1G037760.6 , HORVU6Hr1G092430.1 , HORVU1Hr1G037760.12 , HORVU1Hr1G037760.13 , HORVU1Hr1G037760.10 , HORVU1Hr1G037760.16 , HORVU1Hr1G037760.14 , HORVU1Hr1G037760.15 , HORVU6Hr1G092430.13 , HORVU4Hr1G086800.1 , HORVU4Hr1G086800.2 , HORVU4Hr1G086800.3 , HORVU6Hr1G092430.15 , HORVU6Hr1G092430.14 , HORVU6Hr1G092430.16 , HORVU6Hr1G092430.11 , HORVU6Hr1G092430.12 , HORVU6Hr1G092430.7 , HORVU6Hr1G092430.10 , HORVU1Hr1G037760.2 , HORVU1Hr1G037760.3 , HORVU1Hr1G037760.4 , HORVU1Hr1G053160.2 , HORVU1Hr1G053160.3 , HORVU1Hr1G053160.4 , HORVU1Hr1G053160.5 , HORVU1Hr1G037760.5 , HORVU1Hr1G037760.7 , HORVU4Hr1G079710.10 , HORVU1Hr1G053160.1
Wheat TraesCS1A02G142400 , TraesCS1D02G141400 , TraesCS4A02G412500 , TraesCS4D02G354900 , TraesCS1B02G221100 , TraesCS1A02G207300 , TraesCS6B02G444100 , TraesCS6B02G444100 , TraesCS5A02G529900 , TraesCS4B02G312600 , TraesCS1B02G159400 , TraesCS1D02G210500 , TraesCS6D02G385600 , TraesCS4D02G310100 , TraesCS6A02G402000 , TraesCS4B02G361900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
2 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
4 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
5 Sobic.002G385700 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
6 Sobic.009G196800 cytochrome P450, putative, expressed -
7 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
8 Sobic.010G096300 -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
9 Sobic.006G060200 basic proline-rich protein, putative, expressed -
10 Sobic.008G104801 - -
11 Sobic.007G171600 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
12 Sobic.002G098800 peroxiredoxin, putative, expressed -
13 Sobic.006G134400 protein FAM133, putative, expressed -
14 Sobic.010G019700 cytochrome P450 86A1, putative, expressed -
15 Sobic.002G289400 serine/threonine-protein kinase receptor precursor, putative, expressed -
16 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
17 Sobic.010G109200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
18 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
19 Sobic.002G033800 expressed protein -
20 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -


Gene co-expression network
sample Sobic001G233400 Sobic001G233400 Sobic004G023200 Sobic004G023200 Sobic001G233400--Sobic004G023200 Sobic006G103400 Sobic006G103400 Sobic001G233400--Sobic006G103400 Sobic001G536800 Sobic001G536800 Sobic001G233400--Sobic001G536800 Sobic003G137100 Sobic003G137100 Sobic001G233400--Sobic003G137100 Sobic002G385700 Sobic002G385700 Sobic001G233400--Sobic002G385700 Sobic009G196800 Sobic009G196800 Sobic001G233400--Sobic009G196800 Sobic001G069000 Sobic001G069000 Sobic001G233400--Sobic001G069000 Sobic010G096300 Sobic010G096300 Sobic001G233400--Sobic010G096300 Sobic006G060200 Sobic006G060200 Sobic001G233400--Sobic006G060200 Sobic002G033800 Sobic002G033800 Sobic004G023200--Sobic002G033800 Sobic004G343300 Sobic004G343300 Sobic004G023200--Sobic004G343300 Sobic004G023200--Sobic006G103400 Sobic001G448400 Sobic001G448400 Sobic004G023200--Sobic001G448400 Sobic004G249800 Sobic004G249800 Sobic004G023200--Sobic004G249800 Sobic006G234100 Sobic006G234100 Sobic004G023200--Sobic006G234100 Sobic010G109500 Sobic010G109500 Sobic004G023200--Sobic010G109500 Sobic003G132100 Sobic003G132100 Sobic004G023200--Sobic003G132100 Sobic004G035500 Sobic004G035500 Sobic004G023200--Sobic004G035500 Sobic006G103400--Sobic004G343300 Sobic006G103400--Sobic004G023200 Sobic004G175500 Sobic004G175500 Sobic006G103400--Sobic004G175500 Sobic003G197400 Sobic003G197400 Sobic006G103400--Sobic003G197400 Sobic006G103400--Sobic002G033800 Sobic006G103400--Sobic004G249800 Sobic001G041800 Sobic001G041800 Sobic006G103400--Sobic001G041800 Sobic010G241000 Sobic010G241000 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic001G536800--Sobic001G069000 Sobic009G085500 Sobic009G085500 Sobic001G536800--Sobic009G085500 Sobic001G536800--Sobic003G137100 Sobic001G536800--Sobic006G103400 Sobic002G098800 Sobic002G098800 Sobic001G536800--Sobic002G098800 Sobic009G125400 Sobic009G125400 Sobic001G536800--Sobic009G125400 Sobic008G066100 Sobic008G066100 Sobic001G536800--Sobic008G066100 Sobic004G308700 Sobic004G308700 Sobic001G536800--Sobic004G308700 Sobic001G536800--Sobic001G041800 Sobic003G137100--Sobic001G536800 Sobic003G137100--Sobic009G085500 Sobic003G137100--Sobic001G069000 Sobic001G495300 Sobic001G495300 Sobic003G137100--Sobic001G495300 Sobic006G010900 Sobic006G010900 Sobic003G137100--Sobic006G010900 Sobic003G412900 Sobic003G412900 Sobic003G137100--Sobic003G412900 Sobic003G137100--Sobic001G233400 Sobic002G000700 Sobic002G000700 Sobic003G137100--Sobic002G000700 Sobic003G137100--Sobic006G103400 Sobic002G385700--Sobic001G233400 Sobic002G385700--Sobic001G536800 Sobic002G385700--Sobic003G137100 Sobic002G385700--Sobic001G069000 Sobic006G225200 Sobic006G225200 Sobic002G385700--Sobic006G225200 Sobic002G385700--Sobic006G103400 Sobic002G385700--Sobic010G096300 Sobic003G003600 Sobic003G003600 Sobic002G385700--Sobic003G003600 Sobic004G327700 Sobic004G327700 Sobic002G385700--Sobic004G327700 Sobic010G019700 Sobic010G019700 Sobic009G196800--Sobic010G019700 Sobic007G171600 Sobic007G171600 Sobic009G196800--Sobic007G171600 Sobic009G196800--Sobic004G023200 Sobic009G196800--Sobic001G233400 Sobic003G069100 Sobic003G069100 Sobic009G196800--Sobic003G069100 Sobic009G196800--Sobic002G098800 Sobic009G196800--Sobic001G069000 Sobic009G196800--Sobic002G033800 Sobic009G196800--Sobic009G085500 Sobic001G069000--Sobic003G412900 Sobic001G069000--Sobic009G125400 Sobic001G069000--Sobic002G098800 Sobic001G069000--Sobic006G010900 Sobic001G069000--Sobic001G536800 Sobic001G069000--Sobic004G308700 Sobic003G387100 Sobic003G387100 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic010G096300--Sobic006G103400 Sobic004G227200 Sobic004G227200 Sobic010G096300--Sobic004G227200 Sobic006G093900 Sobic006G093900 Sobic010G096300--Sobic006G093900 Sobic010G096300--Sobic001G233400 Sobic003G435800 Sobic003G435800 Sobic010G096300--Sobic003G435800 Sobic007G223500 Sobic007G223500 Sobic010G096300--Sobic007G223500 Sobic001G035800 Sobic001G035800 Sobic010G096300--Sobic001G035800 Sobic010G096300--Sobic001G069000 Sobic009G164300 Sobic009G164300 Sobic010G096300--Sobic009G164300 Sobic001G269300 Sobic001G269300 Sobic006G060200--Sobic001G269300 Sobic002G215000 Sobic002G215000 Sobic006G060200--Sobic002G215000 Sobic001G217700 Sobic001G217700 Sobic006G060200--Sobic001G217700 Sobic008G131700 Sobic008G131700 Sobic006G060200--Sobic008G131700 Sobic006G060200--Sobic001G233400 Sobic005G036600 Sobic005G036600 Sobic006G060200--Sobic005G036600 Sobic006G060200--Sobic003G137100 Sobic006G060200--Sobic001G495300 Sobic005G084000 Sobic005G084000 Sobic006G060200--Sobic005G084000
Octagon: transcription factors


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