Gene annotation
Transcriptome id Sobic.003G137100.1
Synonym Sb03g011670, HEMG1, PPO1, PPOX
Functional annotation protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
UniProt C5XHZ0
Pfam PF13450
Panther DB PTHR10742 PTHR10742:SF294
NCBI CDD KOG1276; Protoporphyrinogen oxidase
KEGG Orthology K00231; PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01690 : Flavin containing amine oxidoreductase family
RAP-DB (Rice) LOC_Os01g18320.1 : protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a024218 , Zm00025a035165
Brachypodium -
Barley HORVU5Hr1G011100.1 , HORVU5Hr1G011100.2 , HORVU5Hr1G011100.4 , HORVU5Hr1G011100.5
Wheat TraesCS5D02G055700 , TraesCS5A02G045700 , TraesCS5A02G045700 , TraesCS5B02G049800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
2 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
4 Sobic.001G495300 expressed protein -
5 Sobic.006G010900 expressed protein -
6 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
7 Sobic.001G233400 Citrate transporter protein, putative, expressed -
8 Sobic.002G000700 expressed protein -
9 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G110700 nuclear transport factor, putative, expressed -
11 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
12 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
13 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
14 Sobic.001G420300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.006G060200 basic proline-rich protein, putative, expressed -
16 Sobic.002G385700 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
17 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
18 Sobic.008G062500 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
19 Sobic.002G098800 peroxiredoxin, putative, expressed -
20 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G137100 Sobic003G137100 Sobic001G536800 Sobic001G536800 Sobic003G137100--Sobic001G536800 Sobic009G085500 Sobic009G085500 Sobic003G137100--Sobic009G085500 Sobic001G069000 Sobic001G069000 Sobic003G137100--Sobic001G069000 Sobic001G495300 Sobic001G495300 Sobic003G137100--Sobic001G495300 Sobic006G010900 Sobic006G010900 Sobic003G137100--Sobic006G010900 Sobic003G412900 Sobic003G412900 Sobic003G137100--Sobic003G412900 Sobic001G233400 Sobic001G233400 Sobic003G137100--Sobic001G233400 Sobic002G000700 Sobic002G000700 Sobic003G137100--Sobic002G000700 Sobic006G103400 Sobic006G103400 Sobic003G137100--Sobic006G103400 Sobic001G536800--Sobic001G069000 Sobic001G536800--Sobic009G085500 Sobic001G536800--Sobic003G137100 Sobic001G536800--Sobic006G103400 Sobic002G098800 Sobic002G098800 Sobic001G536800--Sobic002G098800 Sobic009G125400 Sobic009G125400 Sobic001G536800--Sobic009G125400 Sobic008G066100 Sobic008G066100 Sobic001G536800--Sobic008G066100 Sobic004G308700 Sobic004G308700 Sobic001G536800--Sobic004G308700 Sobic001G041800 Sobic001G041800 Sobic001G536800--Sobic001G041800 Sobic009G085500--Sobic001G536800 Sobic009G085500--Sobic003G137100 Sobic009G085500--Sobic008G066100 Sobic009G085500--Sobic001G069000 Sobic009G085500--Sobic002G098800 Sobic009G085500--Sobic006G103400 Sobic009G085500--Sobic006G010900 Sobic009G085500--Sobic003G412900 Sobic002G036000 Sobic002G036000 Sobic009G085500--Sobic002G036000 Sobic001G069000--Sobic003G412900 Sobic001G069000--Sobic009G125400 Sobic001G069000--Sobic002G098800 Sobic001G069000--Sobic006G010900 Sobic001G069000--Sobic001G536800 Sobic001G069000--Sobic004G308700 Sobic003G387100 Sobic003G387100 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic007G210600 Sobic007G210600 Sobic001G495300--Sobic007G210600 Sobic003G074700 Sobic003G074700 Sobic001G495300--Sobic003G074700 Sobic005G084000 Sobic005G084000 Sobic001G495300--Sobic005G084000 Sobic001G495300--Sobic003G137100 Sobic001G495300--Sobic001G041800 Sobic002G109000 Sobic002G109000 Sobic001G495300--Sobic002G109000 Sobic001G099000 Sobic001G099000 Sobic001G495300--Sobic001G099000 Sobic008G131700 Sobic008G131700 Sobic001G495300--Sobic008G131700 Sobic007G201400 Sobic007G201400 Sobic001G495300--Sobic007G201400 Sobic006G010900--Sobic001G069000 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G207800 Sobic006G207800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic006G010900--Sobic003G412900 Sobic003G412900--Sobic001G069000 Sobic003G412900--Sobic003G387100 Sobic003G412900--Sobic001G314200 Sobic008G102000 Sobic008G102000 Sobic003G412900--Sobic008G102000 Sobic006G093900 Sobic006G093900 Sobic003G412900--Sobic006G093900 Sobic009G059300 Sobic009G059300 Sobic003G412900--Sobic009G059300 Sobic001G168800 Sobic001G168800 Sobic003G412900--Sobic001G168800 Sobic006G101500 Sobic006G101500 Sobic003G412900--Sobic006G101500 Sobic009G030900 Sobic009G030900 Sobic003G412900--Sobic009G030900 Sobic004G023200 Sobic004G023200 Sobic001G233400--Sobic004G023200 Sobic001G233400--Sobic006G103400 Sobic001G233400--Sobic001G536800 Sobic001G233400--Sobic003G137100 Sobic002G385700 Sobic002G385700 Sobic001G233400--Sobic002G385700 Sobic009G196800 Sobic009G196800 Sobic001G233400--Sobic009G196800 Sobic001G233400--Sobic001G069000 Sobic010G096300 Sobic010G096300 Sobic001G233400--Sobic010G096300 Sobic006G060200 Sobic006G060200 Sobic001G233400--Sobic006G060200 Sobic002G000700--Sobic003G137100 Sobic002G358500 Sobic002G358500 Sobic002G000700--Sobic002G358500 Sobic007G213700 Sobic007G213700 Sobic002G000700--Sobic007G213700 Sobic004G001300 Sobic004G001300 Sobic002G000700--Sobic004G001300 Sobic006G249050 Sobic006G249050 Sobic002G000700--Sobic006G249050 Sobic001G060401 Sobic001G060401 Sobic002G000700--Sobic001G060401 Sobic007G204900 Sobic007G204900 Sobic002G000700--Sobic007G204900 Sobic010G164200 Sobic010G164200 Sobic002G000700--Sobic010G164200 Sobic007G150100 Sobic007G150100 Sobic002G000700--Sobic007G150100 Sobic004G343300 Sobic004G343300 Sobic006G103400--Sobic004G343300 Sobic006G103400--Sobic004G023200 Sobic004G175500 Sobic004G175500 Sobic006G103400--Sobic004G175500 Sobic003G197400 Sobic003G197400 Sobic006G103400--Sobic003G197400 Sobic002G033800 Sobic002G033800 Sobic006G103400--Sobic002G033800 Sobic004G249800 Sobic004G249800 Sobic006G103400--Sobic004G249800 Sobic006G103400--Sobic001G041800 Sobic010G241000 Sobic010G241000 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200
Octagon: transcription factors


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