Gene annotation
Transcriptome id Sobic.001G420300.1
Synonym Sb01g039550, DNA binding with One Finger, SbDof3
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
dof zinc finger domain containing protein, putative, expressed
UniProt H6VSW9 , E6PBL0 , A0A1B6QP24 , R4NEZ5
Pfam PF02701
Panther DB PTHR31992 PTHR31992:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G55370 : OBF-binding protein 3
RAP-DB (Rice) LOC_Os03g16850.1 : dof zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049197 , Zm00025a004485 , Zm00025a009285 , Zm00025a008812 , Zm00025a047370 , Zm00025a017356 , Zm00025a007115 , Zm00025a032602 , Zm00025a016425 , Zm00025a007401 , Zm00025a056781 , Zm00025a023031 , Zm00025a052752 , Zm00025a006464 , Zm00025a039572 , Zm00025a016727 , Zm00025a002866 , Zm00025a014147 , Zm00025a021740 , Zm00025a017302 , Zm00025a001854 , Zm00025a000851 , Zm00025a021884 , Zm00025a032473 , Zm00025a057389 , Zm00025a014756 , Zm00025a008288 , Zm00025a004967 , Zm00025a048181 , Zm00025a026723 , Zm00025a043793
Brachypodium KQJ85311 , KQK22335 , KQK14158 , KQK07701 , PNT73247 , PNT69224 , KQK00955 , KQK16070 , KQK13036 , PNT65625 , PNT65624 , KQJ98766 , PNT69485 , KQJ90639 , KQK03138 , KQK06036 , KQK14319 , KQK23432 , KQK00737 , KQJ84092 , KQK00738
Barley HORVU2Hr1G013060.1 , HORVU2Hr1G119160.6 , HORVU2Hr1G119160.4 , HORVU2Hr1G119160.2 , HORVU2Hr1G119160.3 , HORVU2Hr1G119160.1 , HORVU5Hr1G113190.2 , HORVU5Hr1G113190.1 , HORVU1Hr1G044560.1 , HORVU4Hr1G074990.3 , HORVU4Hr1G074990.2 , HORVU4Hr1G074990.1 , HORVU1Hr1G074140.1 , HORVU3Hr1G083460.1 , HORVU4Hr1G013890.1 , HORVU6Hr1G065250.4 , HORVU6Hr1G065250.5 , HORVU6Hr1G065250.6 , HORVU6Hr1G065250.7 , HORVU5Hr1G048700.1 , HORVU6Hr1G065250.2 , HORVU6Hr1G065250.3 , HORVU6Hr1G065250.8 , HORVU6Hr1G065250.9 , HORVU2Hr1G119110.3 , HORVU2Hr1G119110.7 , HORVU2Hr1G119110.6 , HORVU2Hr1G119110.5 , HORVU2Hr1G119110.4 , HORVU2Hr1G119110.9 , HORVU2Hr1G119110.8 , HORVU6Hr1G065250.1 , HORVU5Hr1G097620.1 , HORVU7Hr1G043250.2 , HORVU5Hr1G113220.1 , HORVU5Hr1G113220.2 , HORVU5Hr1G113220.3 , HORVU5Hr1G113220.4 , HORVU5Hr1G113220.5 , HORVU5Hr1G113220.6 , HORVU5Hr1G097600.1 , HORVU6Hr1G065250.10
Wheat TraesCS5B02G154100 , TraesCS2A02G402200 , TraesCS4B02G206800 , TraesCS2D02G563000 , TraesCS4A02G097800 , TraesCS5A02G155900 , TraesCS4B02G286400 , TraesCS2D02G563400 , TraesCS6D02G236700 , TraesCS2D02G563200 , TraesCS6B02G301500 , TraesCS4D02G285100 , TraesCS2B02G592600 , TraesCS4D02G207600 , TraesCS2D02G399500 , TraesCS2B02G592900 , TraesCS2A02G590800 , TraesCS2B02G592800 , TraesCS5D02G493000 , TraesCS4A02G017700 , TraesCS6A02G274000 , TraesCS2B02G592700 , TraesCS2A02G591200 , TraesCS5D02G161000 , TraesCS5B02G492600 , TraesCS6D02G254200 , TraesCS6B02G270100 , TraesCS2B02G420400 , TraesCS6A02G255500 , TraesCS5A02G479400
Populus PNT43441


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
2 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
3 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
4 Sobic.002G172700 Galactose mutarotase-like superfamily protein(PubMedID : 26465154)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
5 Sobic.008G062400 similar to Diphosphonucleotide phosphatase 1(PubMedID : 29862293)@inositol-1-monophosphatase, putative, expressed K15422: 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase
6 Sobic.001G314200 expressed protein -
7 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
8 Sobic.003G371600 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
9 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
10 Sobic.002G031600 cadmium-induced protein, putative, expressed -
11 Sobic.008G062500 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
12 Sobic.008G188600 glyoxalase family protein, putative, expressed -
13 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
14 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
15 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
16 Sobic.002G098800 peroxiredoxin, putative, expressed -
17 Sobic.010G019700 cytochrome P450 86A1, putative, expressed -
18 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
19 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -
20 Sobic.001G233400 Citrate transporter protein, putative, expressed -


Gene co-expression network
sample Sobic001G420300 Sobic001G420300 Sobic003G412900 Sobic003G412900 Sobic001G420300--Sobic003G412900 Sobic001G069000 Sobic001G069000 Sobic001G420300--Sobic001G069000 Sobic003G137100 Sobic003G137100 Sobic001G420300--Sobic003G137100 Sobic002G172700 Sobic002G172700 Sobic001G420300--Sobic002G172700 Sobic008G062400 Sobic008G062400 Sobic001G420300--Sobic008G062400 Sobic001G314200 Sobic001G314200 Sobic001G420300--Sobic001G314200 Sobic010G153900 Sobic010G153900 Sobic001G420300--Sobic010G153900 Sobic003G371600 Sobic003G371600 Sobic001G420300--Sobic003G371600 Sobic003G387100 Sobic003G387100 Sobic001G420300--Sobic003G387100 Sobic003G412900--Sobic001G069000 Sobic003G412900--Sobic003G387100 Sobic003G412900--Sobic001G314200 Sobic008G102000 Sobic008G102000 Sobic003G412900--Sobic008G102000 Sobic006G093900 Sobic006G093900 Sobic003G412900--Sobic006G093900 Sobic009G059300 Sobic009G059300 Sobic003G412900--Sobic009G059300 Sobic001G168800 Sobic001G168800 Sobic003G412900--Sobic001G168800 Sobic006G101500 Sobic006G101500 Sobic003G412900--Sobic006G101500 Sobic009G030900 Sobic009G030900 Sobic003G412900--Sobic009G030900 Sobic001G069000--Sobic003G412900 Sobic009G125400 Sobic009G125400 Sobic001G069000--Sobic009G125400 Sobic002G098800 Sobic002G098800 Sobic001G069000--Sobic002G098800 Sobic006G010900 Sobic006G010900 Sobic001G069000--Sobic006G010900 Sobic001G536800 Sobic001G536800 Sobic001G069000--Sobic001G536800 Sobic004G308700 Sobic004G308700 Sobic001G069000--Sobic004G308700 Sobic001G069000--Sobic003G387100 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic003G137100--Sobic001G536800 Sobic009G085500 Sobic009G085500 Sobic003G137100--Sobic009G085500 Sobic003G137100--Sobic001G069000 Sobic001G495300 Sobic001G495300 Sobic003G137100--Sobic001G495300 Sobic003G137100--Sobic006G010900 Sobic003G137100--Sobic003G412900 Sobic001G233400 Sobic001G233400 Sobic003G137100--Sobic001G233400 Sobic002G000700 Sobic002G000700 Sobic003G137100--Sobic002G000700 Sobic006G103400 Sobic006G103400 Sobic003G137100--Sobic006G103400 Sobic007G136200 Sobic007G136200 Sobic002G172700--Sobic007G136200 Sobic002G172700--Sobic010G153900 Sobic007G140800 Sobic007G140800 Sobic002G172700--Sobic007G140800 Sobic003G024300 Sobic003G024300 Sobic002G172700--Sobic003G024300 Sobic008G115900 Sobic008G115900 Sobic002G172700--Sobic008G115900 Sobic009G104800 Sobic009G104800 Sobic002G172700--Sobic009G104800 Sobic004G125700 Sobic004G125700 Sobic002G172700--Sobic004G125700 Sobic001G514800 Sobic001G514800 Sobic002G172700--Sobic001G514800 Sobic001G468700 Sobic001G468700 Sobic002G172700--Sobic001G468700 Sobic003G141100 Sobic003G141100 Sobic008G062400--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic008G062400--Sobic003G232700 Sobic007G023200 Sobic007G023200 Sobic008G062400--Sobic007G023200 Sobic004G120100 Sobic004G120100 Sobic008G062400--Sobic004G120100 Sobic002G000600 Sobic002G000600 Sobic008G062400--Sobic002G000600 Sobic003G247400 Sobic003G247400 Sobic008G062400--Sobic003G247400 Sobic003G234900 Sobic003G234900 Sobic008G062400--Sobic003G234900 Sobic002G347600 Sobic002G347600 Sobic008G062400--Sobic002G347600 Sobic004G163800 Sobic004G163800 Sobic008G062400--Sobic004G163800 Sobic001G314200--Sobic003G412900 Sobic001G314200--Sobic009G030900 Sobic001G314200--Sobic001G069000 Sobic006G067400 Sobic006G067400 Sobic001G314200--Sobic006G067400 Sobic001G314200--Sobic003G387100 Sobic001G314200--Sobic006G093900 Sobic001G314200--Sobic009G059300 Sobic008G171300 Sobic008G171300 Sobic001G314200--Sobic008G171300 Sobic008G188600 Sobic008G188600 Sobic001G314200--Sobic008G188600 Sobic010G153900--Sobic007G140800 Sobic010G153900--Sobic008G188600 Sobic009G043000 Sobic009G043000 Sobic010G153900--Sobic009G043000 Sobic010G201700 Sobic010G201700 Sobic010G153900--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic010G153900--Sobic003G303700 Sobic010G095000 Sobic010G095000 Sobic010G153900--Sobic010G095000 Sobic006G207800 Sobic006G207800 Sobic010G153900--Sobic006G207800 Sobic003G241900 Sobic003G241900 Sobic010G153900--Sobic003G241900 Sobic001G020100 Sobic001G020100 Sobic010G153900--Sobic001G020100 Sobic003G371600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic003G371600--Sobic003G378600 Sobic005G194100 Sobic005G194100 Sobic003G371600--Sobic005G194100 Sobic003G371600--Sobic006G093900 Sobic003G371600--Sobic003G412900 Sobic003G371600--Sobic008G171300 Sobic004G239100 Sobic004G239100 Sobic003G371600--Sobic004G239100 Sobic009G140600 Sobic009G140600 Sobic003G371600--Sobic009G140600 Sobic003G371600--Sobic009G043000 Sobic003G387100--Sobic009G059300 Sobic004G336200 Sobic004G336200 Sobic003G387100--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400
Octagon: transcription factors


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