Gene annotation
Transcriptome id Sobic.008G062500.1
Synonym Sb08g005210, GDCH
Functional annotation - (PubMedID : 26976818)
glycine cleavage system H protein, putative, expressed
UniProt C5YT80
Pfam PF01597
Panther DB PTHR11715 PTHR11715:SF1
NCBI CDD KOG3373; Glycine cleavage system H protein (lipoate-binding)
KEGG Orthology K02437; gcvH, glycine cleavage system H protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32470 : Single hybrid motif superfamily protein
RAP-DB (Rice) LOC_Os10g37180.1 : glycine cleavage system H protein, putative, expressed
MaizeGDB (Corn) Zm00025a054160
Brachypodium KQJ97395
Barley HORVU6Hr1G076880.1
Wheat TraesCS6A02G312200 , TraesCS6B02G342400 , TraesCS6D02G291600 , TraesCS6D02G291600
Populus -


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cDNA sequences
Sobic.008G062500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
2 Sobic.009G055800 expressed protein -
3 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
4 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.003G110700 nuclear transport factor, putative, expressed -
6 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
7 Sobic.001G168800 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
8 Sobic.003G439000 rubredoxin family protein, putative, expressed -
9 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
10 Sobic.006G101500 expressed protein -
11 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
12 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
14 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
15 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
16 Sobic.006G010900 expressed protein -
17 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
18 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
19 Sobic.008G116300 expressed protein -
20 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A


Gene co-expression network
sample Sobic008G062500 Sobic008G062500 Sobic003G412900 Sobic003G412900 Sobic008G062500--Sobic003G412900 Sobic009G055800 Sobic009G055800 Sobic008G062500--Sobic009G055800 Sobic003G077400 Sobic003G077400 Sobic008G062500--Sobic003G077400 Sobic003G160800 Sobic003G160800 Sobic008G062500--Sobic003G160800 Sobic003G110700 Sobic003G110700 Sobic008G062500--Sobic003G110700 Sobic007G085800 Sobic007G085800 Sobic008G062500--Sobic007G085800 Sobic001G168800 Sobic001G168800 Sobic008G062500--Sobic001G168800 Sobic003G439000 Sobic003G439000 Sobic008G062500--Sobic003G439000 Sobic009G164300 Sobic009G164300 Sobic008G062500--Sobic009G164300 Sobic001G069000 Sobic001G069000 Sobic003G412900--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic003G412900--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic003G412900--Sobic001G314200 Sobic008G102000 Sobic008G102000 Sobic003G412900--Sobic008G102000 Sobic006G093900 Sobic006G093900 Sobic003G412900--Sobic006G093900 Sobic009G059300 Sobic009G059300 Sobic003G412900--Sobic009G059300 Sobic003G412900--Sobic001G168800 Sobic006G101500 Sobic006G101500 Sobic003G412900--Sobic006G101500 Sobic009G030900 Sobic009G030900 Sobic003G412900--Sobic009G030900 Sobic001G469900 Sobic001G469900 Sobic009G055800--Sobic001G469900 Sobic001G035800 Sobic001G035800 Sobic009G055800--Sobic001G035800 Sobic009G055800--Sobic003G077400 Sobic009G055800--Sobic009G164300 Sobic009G055800--Sobic003G439000 Sobic003G254600 Sobic003G254600 Sobic009G055800--Sobic003G254600 Sobic009G055800--Sobic008G062500 Sobic009G055800--Sobic001G168800 Sobic001G469933 Sobic001G469933 Sobic009G055800--Sobic001G469933 Sobic003G077400--Sobic001G469933 Sobic008G073100 Sobic008G073100 Sobic003G077400--Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic003G077400--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G077400--Sobic004G012900 Sobic001G368500 Sobic001G368500 Sobic003G077400--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic003G077400--Sobic002G401800 Sobic003G077400--Sobic003G387100 Sobic003G077400--Sobic003G160800 Sobic004G336200 Sobic004G336200 Sobic003G077400--Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic003G305000 Sobic003G305000 Sobic003G110700--Sobic003G305000 Sobic003G110700--Sobic008G062500 Sobic003G137100 Sobic003G137100 Sobic003G110700--Sobic003G137100 Sobic002G114700 Sobic002G114700 Sobic003G110700--Sobic002G114700 Sobic003G110700--Sobic009G055800 Sobic008G183200 Sobic008G183200 Sobic003G110700--Sobic008G183200 Sobic004G001300 Sobic004G001300 Sobic003G110700--Sobic004G001300 Sobic002G104000 Sobic002G104000 Sobic003G110700--Sobic002G104000 Sobic004G186200 Sobic004G186200 Sobic003G110700--Sobic004G186200 Sobic006G210400 Sobic006G210400 Sobic007G085800--Sobic006G210400 Sobic006G010900 Sobic006G010900 Sobic007G085800--Sobic006G010900 Sobic007G085800--Sobic003G412900 Sobic008G116300 Sobic008G116300 Sobic007G085800--Sobic008G116300 Sobic007G085800--Sobic001G069000 Sobic007G085800--Sobic003G387100 Sobic010G214100 Sobic010G214100 Sobic007G085800--Sobic010G214100 Sobic007G085800--Sobic001G168800 Sobic001G186200 Sobic001G186200 Sobic007G085800--Sobic001G186200 Sobic001G168800--Sobic003G412900 Sobic001G168800--Sobic003G439000 Sobic001G168800--Sobic001G134700 Sobic001G168800--Sobic003G387100 Sobic004G227200 Sobic004G227200 Sobic001G168800--Sobic004G227200 Sobic003G378600 Sobic003G378600 Sobic001G168800--Sobic003G378600 Sobic001G168800--Sobic006G101500 Sobic001G168800--Sobic001G469900 Sobic001G168800--Sobic007G085800 Sobic003G439000--Sobic001G469900 Sobic003G439000--Sobic001G469933 Sobic003G439000--Sobic001G168800 Sobic004G179200 Sobic004G179200 Sobic003G439000--Sobic004G179200 Sobic001G122400 Sobic001G122400 Sobic003G439000--Sobic001G122400 Sobic003G439000--Sobic009G055800 Sobic003G439000--Sobic001G368500 Sobic002G297400 Sobic002G297400 Sobic003G439000--Sobic002G297400 Sobic001G455500 Sobic001G455500 Sobic003G439000--Sobic001G455500 Sobic007G223500 Sobic007G223500 Sobic009G164300--Sobic007G223500 Sobic001G425400 Sobic001G425400 Sobic009G164300--Sobic001G425400 Sobic002G316700 Sobic002G316700 Sobic009G164300--Sobic002G316700 Sobic009G164300--Sobic009G055800 Sobic009G143100 Sobic009G143100 Sobic009G164300--Sobic009G143100 Sobic004G175500 Sobic004G175500 Sobic009G164300--Sobic004G175500 Sobic008G066100 Sobic008G066100 Sobic009G164300--Sobic008G066100 Sobic008G134800 Sobic008G134800 Sobic009G164300--Sobic008G134800 Sobic003G387800 Sobic003G387800 Sobic009G164300--Sobic003G387800
Octagon: transcription factors


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