Gene annotation
Transcriptome id Sobic.007G204900.1,Sobic.007G204900.2
Synonym Sb07g027230
Functional annotation extracellular ligand-gated ion channel, putative, expressed
UniProt A0A1Z5RBX5 , A0A1B6PIU5
Pfam PF12056
Panther DB PTHR31963 PTHR31963:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21080 : -
RAP-DB (Rice) LOC_Os08g41000.1 : extracellular ligand-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a030334
Brachypodium KQJ98985
Barley HORVU7Hr1G051640.1
Wheat TraesCS7D02G251000 , TraesCS7A02G251100 , TraesCS7B02G140000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
2 Sobic.007G213700 -(PubMedID : 26976818)@aminotransferase, putative, expressed K00830: alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase
3 Sobic.008G011200 STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
5 Sobic.010G096300 -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
6 Sobic.003G068800 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
7 Sobic.006G249050 - -
8 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
9 Sobic.001G098301 - -
10 Sobic.002G000700 expressed protein -
11 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
12 Sobic.001G102300 homeobox domain containing protein, expressed -
13 Sobic.005G036100 phosphoglycerate mutase, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
14 Sobic.003G110700 nuclear transport factor, putative, expressed -
15 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
16 Sobic.001G118100 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
17 Sobic.006G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed -
18 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
19 Sobic.010G005600 SEC14 cytosolic factor family protein, putative, expressed -
20 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II


Gene co-expression network
sample Sobic007G204900 Sobic007G204900 Sobic004G001300 Sobic004G001300 Sobic007G204900--Sobic004G001300 Sobic007G213700 Sobic007G213700 Sobic007G204900--Sobic007G213700 Sobic008G011200 Sobic008G011200 Sobic007G204900--Sobic008G011200 Sobic003G305000 Sobic003G305000 Sobic007G204900--Sobic003G305000 Sobic010G096300 Sobic010G096300 Sobic007G204900--Sobic010G096300 Sobic003G068800 Sobic003G068800 Sobic007G204900--Sobic003G068800 Sobic006G249050 Sobic006G249050 Sobic007G204900--Sobic006G249050 Sobic001G065600 Sobic001G065600 Sobic007G204900--Sobic001G065600 Sobic001G098301 Sobic001G098301 Sobic007G204900--Sobic001G098301 Sobic001G118100 Sobic001G118100 Sobic004G001300--Sobic001G118100 Sobic004G001300--Sobic007G204900 Sobic008G001000 Sobic008G001000 Sobic004G001300--Sobic008G001000 Sobic003G442700 Sobic003G442700 Sobic004G001300--Sobic003G442700 Sobic003G161000 Sobic003G161000 Sobic004G001300--Sobic003G161000 Sobic004G001300--Sobic001G098301 Sobic003G003600 Sobic003G003600 Sobic004G001300--Sobic003G003600 Sobic003G137100 Sobic003G137100 Sobic004G001300--Sobic003G137100 Sobic001G060401 Sobic001G060401 Sobic004G001300--Sobic001G060401 Sobic007G213700--Sobic007G204900 Sobic002G000700 Sobic002G000700 Sobic007G213700--Sobic002G000700 Sobic007G213700--Sobic003G305000 Sobic004G201700 Sobic004G201700 Sobic007G213700--Sobic004G201700 Sobic007G213700--Sobic006G249050 Sobic004G122200 Sobic004G122200 Sobic007G213700--Sobic004G122200 Sobic001G003200 Sobic001G003200 Sobic007G213700--Sobic001G003200 Sobic006G135100 Sobic006G135100 Sobic007G213700--Sobic006G135100 Sobic001G158900 Sobic001G158900 Sobic007G213700--Sobic001G158900 Sobic008G011200--Sobic007G204900 Sobic005G155900 Sobic005G155900 Sobic008G011200--Sobic005G155900 Sobic004G354200 Sobic004G354200 Sobic008G011200--Sobic004G354200 Sobic002G114700 Sobic002G114700 Sobic008G011200--Sobic002G114700 Sobic003G254000 Sobic003G254000 Sobic008G011200--Sobic003G254000 Sobic004G035000 Sobic004G035000 Sobic008G011200--Sobic004G035000 Sobic008G011200--Sobic004G001300 Sobic001G261573 Sobic001G261573 Sobic008G011200--Sobic001G261573 Sobic006G186500 Sobic006G186500 Sobic008G011200--Sobic006G186500 Sobic003G110700 Sobic003G110700 Sobic003G305000--Sobic003G110700 Sobic003G305000--Sobic007G213700 Sobic003G305000--Sobic004G001300 Sobic003G305000--Sobic007G204900 Sobic007G152600 Sobic007G152600 Sobic003G305000--Sobic007G152600 Sobic007G132000 Sobic007G132000 Sobic003G305000--Sobic007G132000 Sobic003G305000--Sobic003G068800 Sobic003G305000--Sobic010G096300 Sobic003G305000--Sobic004G122200 Sobic006G103400 Sobic006G103400 Sobic010G096300--Sobic006G103400 Sobic004G227200 Sobic004G227200 Sobic010G096300--Sobic004G227200 Sobic006G093900 Sobic006G093900 Sobic010G096300--Sobic006G093900 Sobic001G233400 Sobic001G233400 Sobic010G096300--Sobic001G233400 Sobic003G435800 Sobic003G435800 Sobic010G096300--Sobic003G435800 Sobic007G223500 Sobic007G223500 Sobic010G096300--Sobic007G223500 Sobic001G035800 Sobic001G035800 Sobic010G096300--Sobic001G035800 Sobic001G069000 Sobic001G069000 Sobic010G096300--Sobic001G069000 Sobic009G164300 Sobic009G164300 Sobic010G096300--Sobic009G164300 Sobic003G108600 Sobic003G108600 Sobic003G068800--Sobic003G108600 Sobic001G102300 Sobic001G102300 Sobic003G068800--Sobic001G102300 Sobic001G377500 Sobic001G377500 Sobic003G068800--Sobic001G377500 Sobic003G068800--Sobic001G158900 Sobic003G068800--Sobic001G065600 Sobic002G359600 Sobic002G359600 Sobic003G068800--Sobic002G359600 Sobic005G188600 Sobic005G188600 Sobic003G068800--Sobic005G188600 Sobic003G068800--Sobic001G098301 Sobic003G068800--Sobic007G204900 Sobic005G036600 Sobic005G036600 Sobic006G249050--Sobic005G036600 Sobic001G217700 Sobic001G217700 Sobic006G249050--Sobic001G217700 Sobic006G249050--Sobic002G000700 Sobic006G249050--Sobic004G001300 Sobic006G249050--Sobic007G204900 Sobic006G249050--Sobic007G213700 Sobic007G052900 Sobic007G052900 Sobic006G249050--Sobic007G052900 Sobic008G183200 Sobic008G183200 Sobic006G249050--Sobic008G183200 Sobic006G249050--Sobic004G122200 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic001G065600--Sobic005G188600 Sobic006G010900 Sobic006G010900 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic002G036000 Sobic002G036000 Sobic001G065600--Sobic002G036000 Sobic001G065600--Sobic001G003200 Sobic001G065600--Sobic003G003600 Sobic010G043800 Sobic010G043800 Sobic001G098301--Sobic010G043800 Sobic001G098301--Sobic004G001300 Sobic001G098301--Sobic005G188600 Sobic001G048400 Sobic001G048400 Sobic001G098301--Sobic001G048400 Sobic009G121000 Sobic009G121000 Sobic001G098301--Sobic009G121000 Sobic006G038500 Sobic006G038500 Sobic001G098301--Sobic006G038500 Sobic002G000600 Sobic002G000600 Sobic001G098301--Sobic002G000600 Sobic006G101500 Sobic006G101500 Sobic001G098301--Sobic006G101500 Sobic007G150100 Sobic007G150100 Sobic001G098301--Sobic007G150100
Octagon: transcription factors


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