Gene annotation
Transcriptome id Sobic.003G343400.1
Synonym Sb03g038740, ABC1, ATABC1, LAF6, ATNAP1
Functional annotation sufB/sufD domain containing protein, putative, expressed
UniProt C5XNY9
Pfam PF01458
Panther DB PTHR30508 PTHR30508:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016226; iron-sulfur cluster assembly


Orthologs (automatic annotation)
TAIR AT4G04770 : ATP binding cassette protein 1
RAP-DB (Rice) LOC_Os01g61400.1 : sufB/sufD domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039909 , Zm00025a003446 , Zm00025a039732 , Zm00025a027941 , Zm00025a027004
Brachypodium KQK10408
Barley HORVU3Hr1G087860.1
Wheat TraesCS3B02G382400 , TraesCS3A02G349800 , TraesCS3D02G343800
Populus -


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cDNA sequences
Sobic.003G343400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
2 Sobic.002G246500 OTU-like cysteine protease family protein, putative, expressed -
3 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
4 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
5 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
6 Sobic.001G512500 expressed protein -
7 Sobic.001G032700 heat shock protein DnaJ, putative, expressed -
8 Sobic.010G140600 bolA, putative, expressed -
9 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
10 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
11 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
12 Sobic.003G125400 Fe-S metabolism associated domain containing protein, expressed -
13 Sobic.010G058200 sulfiredoxin-1, putative, expressed K12260: sulfiredoxin
14 Sobic.009G068300 chloroplast lumen common family protein, putative, expressed -
15 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
16 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -
17 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
18 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
19 Sobic.001G124800 expressed protein -
20 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G343400 Sobic003G343400 Sobic001G327800 Sobic001G327800 Sobic003G343400--Sobic001G327800 Sobic002G246500 Sobic002G246500 Sobic003G343400--Sobic002G246500 Sobic002G231200 Sobic002G231200 Sobic003G343400--Sobic002G231200 Sobic006G210400 Sobic006G210400 Sobic003G343400--Sobic006G210400 Sobic004G054400 Sobic004G054400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic001G032700 Sobic001G032700 Sobic003G343400--Sobic001G032700 Sobic010G140600 Sobic010G140600 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600 Sobic001G327800--Sobic002G231200 Sobic005G014700 Sobic005G014700 Sobic001G327800--Sobic005G014700 Sobic004G163800 Sobic004G163800 Sobic001G327800--Sobic004G163800 Sobic001G327800--Sobic003G343400 Sobic005G082200 Sobic005G082200 Sobic001G327800--Sobic005G082200 Sobic009G164400 Sobic009G164400 Sobic001G327800--Sobic009G164400 Sobic001G327800--Sobic001G032700 Sobic001G327800--Sobic004G054400 Sobic003G067100 Sobic003G067100 Sobic001G327800--Sobic003G067100 Sobic002G246500--Sobic003G343400 Sobic003G125400 Sobic003G125400 Sobic002G246500--Sobic003G125400 Sobic009G068300 Sobic009G068300 Sobic002G246500--Sobic009G068300 Sobic010G189200 Sobic010G189200 Sobic002G246500--Sobic010G189200 Sobic010G255100 Sobic010G255100 Sobic002G246500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic002G246500--Sobic006G186600 Sobic006G256600 Sobic006G256600 Sobic002G246500--Sobic006G256600 Sobic002G102200 Sobic002G102200 Sobic002G246500--Sobic002G102200 Sobic002G246500--Sobic006G210400 Sobic002G231200--Sobic001G327800 Sobic001G261573 Sobic001G261573 Sobic002G231200--Sobic001G261573 Sobic002G231200--Sobic003G343400 Sobic003G234900 Sobic003G234900 Sobic002G231200--Sobic003G234900 Sobic006G010900 Sobic006G010900 Sobic002G231200--Sobic006G010900 Sobic003G085100 Sobic003G085100 Sobic002G231200--Sobic003G085100 Sobic001G531500 Sobic001G531500 Sobic002G231200--Sobic001G531500 Sobic002G118200 Sobic002G118200 Sobic002G231200--Sobic002G118200 Sobic003G150800 Sobic003G150800 Sobic002G231200--Sobic003G150800 Sobic006G210400--Sobic006G010900 Sobic007G085800 Sobic007G085800 Sobic006G210400--Sobic007G085800 Sobic006G210400--Sobic006G256600 Sobic003G141100 Sobic003G141100 Sobic006G210400--Sobic003G141100 Sobic002G297400 Sobic002G297400 Sobic006G210400--Sobic002G297400 Sobic003G387100 Sobic003G387100 Sobic006G210400--Sobic003G387100 Sobic001G309300 Sobic001G309300 Sobic006G210400--Sobic001G309300 Sobic006G210400--Sobic010G255100 Sobic001G124800 Sobic001G124800 Sobic006G210400--Sobic001G124800 Sobic004G054400--Sobic001G124800 Sobic004G054400--Sobic001G309300 Sobic004G054400--Sobic003G387100 Sobic004G054400--Sobic001G032700 Sobic008G001900 Sobic008G001900 Sobic004G054400--Sobic008G001900 Sobic001G516901 Sobic001G516901 Sobic004G054400--Sobic001G516901 Sobic004G054400--Sobic001G512500 Sobic004G336000 Sobic004G336000 Sobic004G054400--Sobic004G336000 Sobic004G054400--Sobic006G010900 Sobic001G512500--Sobic004G054400 Sobic001G512500--Sobic001G032700 Sobic001G512500--Sobic001G124800 Sobic003G014300 Sobic003G014300 Sobic001G512500--Sobic003G014300 Sobic004G298900 Sobic004G298900 Sobic001G512500--Sobic004G298900 Sobic003G343500 Sobic003G343500 Sobic001G512500--Sobic003G343500 Sobic010G058200 Sobic010G058200 Sobic001G512500--Sobic010G058200 Sobic004G026500 Sobic004G026500 Sobic001G512500--Sobic004G026500 Sobic003G037300 Sobic003G037300 Sobic001G512500--Sobic003G037300 Sobic001G032700--Sobic004G054400 Sobic001G032700--Sobic001G512500 Sobic001G032700--Sobic001G327800 Sobic001G032700--Sobic005G014700 Sobic001G032700--Sobic004G163800 Sobic001G032700--Sobic003G343400 Sobic001G032700--Sobic001G309300 Sobic001G308200 Sobic001G308200 Sobic001G032700--Sobic001G308200 Sobic001G032700--Sobic002G231200 Sobic010G269400 Sobic010G269400 Sobic010G140600--Sobic010G269400 Sobic010G140600--Sobic010G058200 Sobic001G286600 Sobic001G286600 Sobic010G140600--Sobic001G286600 Sobic004G281900 Sobic004G281900 Sobic010G140600--Sobic004G281900 Sobic004G238200 Sobic004G238200 Sobic010G140600--Sobic004G238200 Sobic010G140600--Sobic002G102200 Sobic001G072700 Sobic001G072700 Sobic010G140600--Sobic001G072700 Sobic006G155500 Sobic006G155500 Sobic010G140600--Sobic006G155500 Sobic008G144800 Sobic008G144800 Sobic010G140600--Sobic008G144800 Sobic001G158900 Sobic001G158900 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic005G188600 Sobic005G188600 Sobic001G065600--Sobic005G188600 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic002G036000 Sobic002G036000 Sobic001G065600--Sobic002G036000 Sobic001G003200 Sobic001G003200 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600
Octagon: transcription factors


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