Gene annotation
Transcriptome id Sobic.001G327800.3,Sobic.001G327800.1,Sobic.001G327800.2
Synonym MSL2
Functional annotation uncharacterized mscS family protein, putative, expressed
UniProt A0A1Z5S8S6 , A0A1B6QMF4
Pfam PF00924
Panther DB PTHR30566 PTHR30566:SF13
NCBI CDD -
KEGG Orthology K16052; ynaI, MscS family membrane protein
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G10490 : MSCS-like 2
RAP-DB (Rice) LOC_Os02g45690.1 : uncharacterized mscS family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003011
Brachypodium KQK14395 , KQK14396 , KQK17158 , PNT75448 , PNT75449 , PNT75446 , PNT75447 , PNT75444 , PNT75445 , PNT75442 , PNT75443 , PNT74504
Barley HORVU5Hr1G002510.6 , HORVU5Hr1G002510.5 , HORVU5Hr1G002510.4 , HORVU5Hr1G002510.3 , HORVU5Hr1G002510.2 , HORVU5Hr1G002510.1 , HORVU7Hr1G105340.8 , HORVU7Hr1G105340.9 , HORVU7Hr1G105340.2 , HORVU7Hr1G105340.3 , HORVU7Hr1G105340.1 , HORVU7Hr1G105340.6 , HORVU7Hr1G105340.7 , HORVU7Hr1G105340.4 , HORVU7Hr1G105340.5 , HORVU7Hr1G105340.10 , HORVU7Hr1G105340.11 , HORVU7Hr1G105340.12 , HORVU7Hr1G105340.14 , HORVU7Hr1G105340.16 , HORVU7Hr1G105340.17
Wheat TraesCS7D02G445800 , TraesCS7D02G445800 , TraesCS7D02G445800 , TraesCS7B02G358900 , TraesCS5B02G013900 , TraesCS5D02G021600 , TraesCS5A02G015600 , TraesCS7A02G457200 , TraesCS7A02G457200 , TraesCS7B02G358900
Populus -


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cDNA sequences
Sobic.001G327800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
2 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
3 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
4 Sobic.003G343400 sufB/sufD domain containing protein, putative, expressed -
5 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
6 Sobic.009G164400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
7 Sobic.001G032700 heat shock protein DnaJ, putative, expressed -
8 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
9 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
10 Sobic.002G343400 tic20, putative, expressed -
11 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
12 Sobic.004G120100 phosphoglucan, water dikinase, chloroplast precursor, putative, expressed K15535: phosphoglucan, water dikinase
13 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
14 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
15 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
16 Sobic.003G369400 expressed protein -
17 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
18 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
19 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
20 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G327800 Sobic001G327800 Sobic002G231200 Sobic002G231200 Sobic001G327800--Sobic002G231200 Sobic005G014700 Sobic005G014700 Sobic001G327800--Sobic005G014700 Sobic004G163800 Sobic004G163800 Sobic001G327800--Sobic004G163800 Sobic003G343400 Sobic003G343400 Sobic001G327800--Sobic003G343400 Sobic005G082200 Sobic005G082200 Sobic001G327800--Sobic005G082200 Sobic009G164400 Sobic009G164400 Sobic001G327800--Sobic009G164400 Sobic001G032700 Sobic001G032700 Sobic001G327800--Sobic001G032700 Sobic004G054400 Sobic004G054400 Sobic001G327800--Sobic004G054400 Sobic003G067100 Sobic003G067100 Sobic001G327800--Sobic003G067100 Sobic002G231200--Sobic001G327800 Sobic001G261573 Sobic001G261573 Sobic002G231200--Sobic001G261573 Sobic002G231200--Sobic003G343400 Sobic003G234900 Sobic003G234900 Sobic002G231200--Sobic003G234900 Sobic006G010900 Sobic006G010900 Sobic002G231200--Sobic006G010900 Sobic003G085100 Sobic003G085100 Sobic002G231200--Sobic003G085100 Sobic001G531500 Sobic001G531500 Sobic002G231200--Sobic001G531500 Sobic002G118200 Sobic002G118200 Sobic002G231200--Sobic002G118200 Sobic003G150800 Sobic003G150800 Sobic002G231200--Sobic003G150800 Sobic005G014700--Sobic003G067100 Sobic001G102500 Sobic001G102500 Sobic005G014700--Sobic001G102500 Sobic002G043600 Sobic002G043600 Sobic005G014700--Sobic002G043600 Sobic005G014700--Sobic001G327800 Sobic010G255100 Sobic010G255100 Sobic005G014700--Sobic010G255100 Sobic004G238900 Sobic004G238900 Sobic005G014700--Sobic004G238900 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic005G014700--Sobic001G032700 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic004G163800--Sobic003G234900 Sobic003G232700 Sobic003G232700 Sobic004G163800--Sobic003G232700 Sobic005G084500 Sobic005G084500 Sobic004G163800--Sobic005G084500 Sobic002G431300 Sobic002G431300 Sobic004G163800--Sobic002G431300 Sobic004G238200 Sobic004G238200 Sobic004G163800--Sobic004G238200 Sobic004G163800--Sobic001G327800 Sobic002G343400 Sobic002G343400 Sobic004G163800--Sobic002G343400 Sobic003G343400--Sobic001G327800 Sobic002G246500 Sobic002G246500 Sobic003G343400--Sobic002G246500 Sobic003G343400--Sobic002G231200 Sobic006G210400 Sobic006G210400 Sobic003G343400--Sobic006G210400 Sobic003G343400--Sobic004G054400 Sobic001G512500 Sobic001G512500 Sobic003G343400--Sobic001G512500 Sobic003G343400--Sobic001G032700 Sobic010G140600 Sobic010G140600 Sobic003G343400--Sobic010G140600 Sobic001G065600 Sobic001G065600 Sobic003G343400--Sobic001G065600 Sobic008G051300 Sobic008G051300 Sobic005G082200--Sobic008G051300 Sobic005G082200--Sobic001G327800 Sobic004G359100 Sobic004G359100 Sobic005G082200--Sobic004G359100 Sobic005G082200--Sobic002G343400 Sobic005G082200--Sobic003G067100 Sobic002G424700 Sobic002G424700 Sobic005G082200--Sobic002G424700 Sobic005G072100 Sobic005G072100 Sobic005G082200--Sobic005G072100 Sobic005G082200--Sobic004G054400 Sobic002G293600 Sobic002G293600 Sobic005G082200--Sobic002G293600 Sobic009G164400--Sobic001G327800 Sobic009G164400--Sobic005G014700 Sobic009G164400--Sobic002G118200 Sobic009G164400--Sobic005G084500 Sobic009G164400--Sobic004G163800 Sobic007G005400 Sobic007G005400 Sobic009G164400--Sobic007G005400 Sobic009G164400--Sobic002G231200 Sobic009G164400--Sobic005G082200 Sobic009G164400--Sobic003G067100 Sobic001G032700--Sobic004G054400 Sobic001G032700--Sobic001G512500 Sobic001G032700--Sobic001G327800 Sobic001G032700--Sobic005G014700 Sobic001G032700--Sobic004G163800 Sobic001G032700--Sobic003G343400 Sobic001G309300 Sobic001G309300 Sobic001G032700--Sobic001G309300 Sobic001G308200 Sobic001G308200 Sobic001G032700--Sobic001G308200 Sobic001G032700--Sobic002G231200 Sobic001G124800 Sobic001G124800 Sobic004G054400--Sobic001G124800 Sobic004G054400--Sobic001G309300 Sobic003G387100 Sobic003G387100 Sobic004G054400--Sobic003G387100 Sobic004G054400--Sobic001G032700 Sobic008G001900 Sobic008G001900 Sobic004G054400--Sobic008G001900 Sobic001G516901 Sobic001G516901 Sobic004G054400--Sobic001G516901 Sobic004G054400--Sobic001G512500 Sobic004G336000 Sobic004G336000 Sobic004G054400--Sobic004G336000 Sobic004G054400--Sobic006G010900 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic003G067100--Sobic004G163800
Octagon: transcription factors


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