Gene annotation
| Transcriptome id | Sobic.005G089600.2,Sobic.005G089600.1 |
|---|---|
| Synonym | Sb05g007310, ATSPS4F,SPS3;SPS;SPS3 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) Sucrose phosphate synthase genes (PubMedID : 24456189) sucrose phosphate synthase (PubMedID : 26616172) Sugar synthesis (PubMedID : 27330561) sucrose-phosphate synthase, putative, expressed |
| UniProt | A0A1B6PR48 , A0A1Z5RHP3 |
| Pfam | PF13579 PF00534 PF13579 PF05116 PF00534 |
| Panther DB | PTHR12526 PTHR12526:SF358 |
| NCBI CDD | KOG0853; Glycosyltransferase |
| KEGG Orthology | K00696; sucrose-phosphate synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G10120 : Sucrose-phosphate synthase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g12810.1 : sucrose-phosphate synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029524 |
| Brachypodium | KQJ83063 , KQJ88853 |
| Barley | HORVU4Hr1G015570.4 , HORVU4Hr1G015570.5 , HORVU4Hr1G015570.6 , HORVU4Hr1G015570.7 , HORVU4Hr1G015570.1 , HORVU4Hr1G015570.2 , HORVU4Hr1G015570.3 , HORVU4Hr1G015570.8 , HORVU4Hr1G015570.9 , HORVU4Hr1G015570.16 , HORVU4Hr1G015570.17 , HORVU4Hr1G015570.14 , HORVU4Hr1G015570.15 , HORVU4Hr1G015570.12 , HORVU4Hr1G015570.13 , HORVU4Hr1G015570.10 , HORVU4Hr1G015570.11 , HORVU4Hr1G015570.18 , HORVU4Hr1G015570.19 , HORVU4Hr1G015570.28 , HORVU4Hr1G015570.27 , HORVU4Hr1G015570.26 , HORVU4Hr1G015570.25 , HORVU4Hr1G015570.24 , HORVU4Hr1G015570.23 , HORVU4Hr1G015570.22 , HORVU4Hr1G015570.21 , HORVU4Hr1G015570.20 |
| Wheat | TraesCS4D02G088200 , TraesCS4D02G088200 , TraesCS4D02G088200 , TraesCS4A02G225100 , TraesCS4A02G225100 , TraesCS4B02G091100 |
| Populus | - |
JBrowse
| Sobic.005G089600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G431700 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 2 | Sobic.003G367500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 3 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 4 | Sobic.003G398800 | expressed protein | - |
| 5 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 6 | Sobic.003G431900 | -(PubMedID : 26976818)@expressed protein | K07562: nonsense-mediated mRNA decay protein 3 |
| 7 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 8 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 9 | Sobic.003G371250 | - | - |
| 10 | Sobic.003G234200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 11 | Sobic.005G231500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed | - |
| 12 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 13 | Sobic.004G215800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed | K04354: serine/threonine-protein phosphatase 2A regulatory subunit B |
| 14 | Sobic.009G129300 | heat shock protein DnaJ, putative, expressed | - |
| 15 | Sobic.010G067100 | glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 16 | Sobic.001G491000 | ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed | K01783: rpe, ribulose-phosphate 3-epimerase |
| 17 | Sobic.002G370600 | - | - |
| 18 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 19 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 20 | Sobic.003G097600 | - | - |
Gene co-expression network
Octagon: transcription factors
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