Gene annotation
Transcriptome id Sobic.003G234200.6
Synonym CA4, ATBCA4, BCA4,CA; BCA4, Sb03g029170, CA4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
carbonic anhydrase (PubMedID : 26904072)
- (PubMedID : 26976818)
carbonic anhydrase, chloroplast precursor, putative, expressed
UniProt A0A1B6Q4X6
Pfam PF00484
Panther DB PTHR11002 PTHR11002:SF7
NCBI CDD KOG1578; Predicted carbonic anhydrase involved in protection against oxidative damage
KEGG Orthology K01673; cynT, carbonic anhydrase
Gene Ontology GO:0008270; zinc ion binding GO:0004089carbonate dehydratase activity


Orthologs (automatic annotation)
TAIR AT1G70410 : beta carbonic anhydrase 4
RAP-DB (Rice) LOC_Os01g45274.3 : carbonic anhydrase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a028290 , Zm00025a038668 , Zm00025a028289 , Zm00025a028288
Brachypodium KQK08917 , KQK08916 , KQK08915 , KQK08919 , PNT72466
Barley HORVU3Hr1G057090.10 , HORVU3Hr1G057090.11 , HORVU3Hr1G057090.12 , HORVU3Hr1G057090.13 , HORVU3Hr1G057090.14 , HORVU3Hr1G057090.15 , HORVU3Hr1G057090.7 , HORVU3Hr1G057090.5 , HORVU3Hr1G057090.6 , HORVU3Hr1G057090.8 , HORVU3Hr1G057090.9 , HORVU3Hr1G057090.2 , HORVU3Hr1G057090.3 , HORVU3Hr1G057090.1 , HORVU3Hr1G057090.4
Wheat TraesCS7B02G354800 , TraesCS7D02G443500 , TraesCS7A02G454500 , TraesCS7D02G443400
Populus -


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cDNA sequences
Sobic.003G234200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
2 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
3 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
4 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
5 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -
6 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
7 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
8 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
9 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
10 Sobic.004G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed K00703: starch synthase
11 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
12 Sobic.003G256700 expressed protein -
13 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
14 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
15 Sobic.004G305800 expressed protein -
16 Sobic.009G140800 DUF647 domain containing protein, putative, expressed -
17 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
19 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
20 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic003G234200 Sobic003G234200 Sobic003G431900 Sobic003G431900 Sobic003G234200--Sobic003G431900 Sobic008G053200 Sobic008G053200 Sobic003G234200--Sobic008G053200 Sobic002G324500 Sobic002G324500 Sobic003G234200--Sobic002G324500 Sobic001G329400 Sobic001G329400 Sobic003G234200--Sobic001G329400 Sobic005G165500 Sobic005G165500 Sobic003G234200--Sobic005G165500 Sobic003G367500 Sobic003G367500 Sobic003G234200--Sobic003G367500 Sobic006G244000 Sobic006G244000 Sobic003G234200--Sobic006G244000 Sobic001G519800 Sobic001G519800 Sobic003G234200--Sobic001G519800 Sobic009G129300 Sobic009G129300 Sobic003G234200--Sobic009G129300 Sobic003G431900--Sobic008G053200 Sobic003G431900--Sobic003G234200 Sobic004G305800 Sobic004G305800 Sobic003G431900--Sobic004G305800 Sobic003G256700 Sobic003G256700 Sobic003G431900--Sobic003G256700 Sobic003G431900--Sobic001G519800 Sobic003G431900--Sobic005G165500 Sobic003G431900--Sobic002G324500 Sobic004G308700 Sobic004G308700 Sobic003G431900--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431900--Sobic004G272100 Sobic008G053200--Sobic003G431900 Sobic008G053200--Sobic001G519800 Sobic008G053200--Sobic003G234200 Sobic002G036000 Sobic002G036000 Sobic008G053200--Sobic002G036000 Sobic004G238600 Sobic004G238600 Sobic008G053200--Sobic004G238600 Sobic004G283100 Sobic004G283100 Sobic008G053200--Sobic004G283100 Sobic008G053200--Sobic004G272100 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic002G324500--Sobic003G367500 Sobic002G324500--Sobic003G234200 Sobic008G117000 Sobic008G117000 Sobic002G324500--Sobic008G117000 Sobic002G324500--Sobic003G431900 Sobic004G215800 Sobic004G215800 Sobic002G324500--Sobic004G215800 Sobic002G324500--Sobic003G256700 Sobic007G009200 Sobic007G009200 Sobic002G324500--Sobic007G009200 Sobic003G024300 Sobic003G024300 Sobic002G324500--Sobic003G024300 Sobic002G324500--Sobic005G089600 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic005G165500--Sobic004G305800 Sobic005G165500--Sobic003G431900 Sobic005G165500--Sobic008G053200 Sobic005G165500--Sobic003G234200 Sobic005G165500--Sobic009G129300 Sobic007G034300 Sobic007G034300 Sobic005G165500--Sobic007G034300 Sobic010G201700 Sobic010G201700 Sobic005G165500--Sobic010G201700 Sobic003G398800 Sobic003G398800 Sobic005G165500--Sobic003G398800 Sobic005G165500--Sobic004G272100 Sobic003G367500--Sobic004G215800 Sobic007G105500 Sobic007G105500 Sobic003G367500--Sobic007G105500 Sobic003G367500--Sobic003G398800 Sobic004G154200 Sobic004G154200 Sobic003G367500--Sobic004G154200 Sobic010G039500 Sobic010G039500 Sobic003G367500--Sobic010G039500 Sobic003G367500--Sobic002G324500 Sobic003G367500--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic003G367500--Sobic004G059800 Sobic003G367500--Sobic005G089600 Sobic006G244000--Sobic001G329400 Sobic009G048900 Sobic009G048900 Sobic006G244000--Sobic009G048900 Sobic006G244000--Sobic003G256700 Sobic006G244000--Sobic009G104800 Sobic008G104601 Sobic008G104601 Sobic006G244000--Sobic008G104601 Sobic004G125700 Sobic004G125700 Sobic006G244000--Sobic004G125700 Sobic006G244000--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic006G244000--Sobic001G406000 Sobic001G134100 Sobic001G134100 Sobic006G244000--Sobic001G134100 Sobic001G519800--Sobic004G272100 Sobic001G102800 Sobic001G102800 Sobic001G519800--Sobic001G102800 Sobic003G002300 Sobic003G002300 Sobic001G519800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic001G519800--Sobic002G051100 Sobic003G431700 Sobic003G431700 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic007G004800 Sobic007G004800 Sobic001G519800--Sobic007G004800 Sobic001G519800--Sobic008G053200 Sobic009G129300--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic009G129300--Sobic010G181300 Sobic009G129300--Sobic003G398800 Sobic009G129300--Sobic003G127800 Sobic009G129300--Sobic004G305800 Sobic006G238200 Sobic006G238200 Sobic009G129300--Sobic006G238200 Sobic002G275300 Sobic002G275300 Sobic009G129300--Sobic002G275300 Sobic004G268000 Sobic004G268000 Sobic009G129300--Sobic004G268000 Sobic009G129300--Sobic007G161500
Octagon: transcription factors


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