Gene annotation
Transcriptome id Sobic.002G324500.1
Synonym RP1, ATRP1, Sb02g035200,PPDK RP1;PPDK-rp/2
Functional annotation PPDK regulatory protein (PubMedID : 26465154)
PPDK regulatory protein (PubMedID : 26465154)
- (PubMedID : 26976818)
pyruvate orthophosphate dikinase regulatory protein (PubMedID : 27016024)
pyruvate Pi dikinase regulatory protein, putative, expressed
UniProt A0A1B6QEM9 , A9QNE5
Pfam PF03618
Panther DB PTHR31756 PTHR31756:SF3
NCBI CDD -
KEGG Orthology K09773; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
Gene Ontology GO:0016772; transferase activity, transferring phosphorus-containing groups GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G21210 : PPDK regulatory protein
RAP-DB (Rice) LOC_Os07g34640.2 : pyruvate Pi dikinase regulatory protein, putative, expressed
MaizeGDB (Corn) Zm00025a048267 , Zm00025a014822
Brachypodium -
Barley HORVU2Hr1G045170.7 , HORVU2Hr1G045170.6 , HORVU2Hr1G045170.5 , HORVU2Hr1G045170.4 , HORVU2Hr1G045170.3 , HORVU2Hr1G045170.2 , HORVU2Hr1G045170.10 , HORVU2Hr1G045170.11
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
2 Sobic.003G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
3 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
4 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
5 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.003G256700 expressed protein -
7 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
9 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
10 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
11 Sobic.003G398800 expressed protein -
12 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
13 Sobic.004G154200 expressed protein -
14 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
15 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
16 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
17 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
18 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
19 Sobic.004G125700 isochorismatase family protein, putative, expressed -
20 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G324500 Sobic002G324500 Sobic003G367500 Sobic003G367500 Sobic002G324500--Sobic003G367500 Sobic003G234200 Sobic003G234200 Sobic002G324500--Sobic003G234200 Sobic008G117000 Sobic008G117000 Sobic002G324500--Sobic008G117000 Sobic003G431900 Sobic003G431900 Sobic002G324500--Sobic003G431900 Sobic004G215800 Sobic004G215800 Sobic002G324500--Sobic004G215800 Sobic003G256700 Sobic003G256700 Sobic002G324500--Sobic003G256700 Sobic007G009200 Sobic007G009200 Sobic002G324500--Sobic007G009200 Sobic003G024300 Sobic003G024300 Sobic002G324500--Sobic003G024300 Sobic005G089600 Sobic005G089600 Sobic002G324500--Sobic005G089600 Sobic003G367500--Sobic004G215800 Sobic007G105500 Sobic007G105500 Sobic003G367500--Sobic007G105500 Sobic003G398800 Sobic003G398800 Sobic003G367500--Sobic003G398800 Sobic004G154200 Sobic004G154200 Sobic003G367500--Sobic004G154200 Sobic010G039500 Sobic010G039500 Sobic003G367500--Sobic010G039500 Sobic003G367500--Sobic002G324500 Sobic003G127800 Sobic003G127800 Sobic003G367500--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic003G367500--Sobic004G059800 Sobic003G367500--Sobic005G089600 Sobic003G234200--Sobic003G431900 Sobic008G053200 Sobic008G053200 Sobic003G234200--Sobic008G053200 Sobic003G234200--Sobic002G324500 Sobic001G329400 Sobic001G329400 Sobic003G234200--Sobic001G329400 Sobic005G165500 Sobic005G165500 Sobic003G234200--Sobic005G165500 Sobic003G234200--Sobic003G367500 Sobic006G244000 Sobic006G244000 Sobic003G234200--Sobic006G244000 Sobic001G519800 Sobic001G519800 Sobic003G234200--Sobic001G519800 Sobic009G129300 Sobic009G129300 Sobic003G234200--Sobic009G129300 Sobic008G117000--Sobic002G324500 Sobic001G073900 Sobic001G073900 Sobic008G117000--Sobic001G073900 Sobic003G036200 Sobic003G036200 Sobic008G117000--Sobic003G036200 Sobic001G134100 Sobic001G134100 Sobic008G117000--Sobic001G134100 Sobic008G117000--Sobic004G215800 Sobic008G117000--Sobic003G367500 Sobic008G117000--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic008G117000--Sobic003G332700 Sobic003G185900 Sobic003G185900 Sobic008G117000--Sobic003G185900 Sobic003G431900--Sobic008G053200 Sobic003G431900--Sobic003G234200 Sobic004G305800 Sobic004G305800 Sobic003G431900--Sobic004G305800 Sobic003G431900--Sobic003G256700 Sobic003G431900--Sobic001G519800 Sobic003G431900--Sobic005G165500 Sobic003G431900--Sobic002G324500 Sobic004G308700 Sobic004G308700 Sobic003G431900--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431900--Sobic004G272100 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic004G215800--Sobic003G367500 Sobic002G404800 Sobic002G404800 Sobic004G215800--Sobic002G404800 Sobic008G033000 Sobic008G033000 Sobic004G215800--Sobic008G033000 Sobic009G256100 Sobic009G256100 Sobic004G215800--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G215800--Sobic003G097600 Sobic004G112100 Sobic004G112100 Sobic004G215800--Sobic004G112100 Sobic003G256700--Sobic003G431900 Sobic003G256700--Sobic006G244000 Sobic003G256700--Sobic002G324500 Sobic004G125700 Sobic004G125700 Sobic003G256700--Sobic004G125700 Sobic009G104800 Sobic009G104800 Sobic003G256700--Sobic009G104800 Sobic003G256700--Sobic008G053200 Sobic002G036000 Sobic002G036000 Sobic003G256700--Sobic002G036000 Sobic003G256700--Sobic001G329400 Sobic003G256700--Sobic003G234200 Sobic009G237100 Sobic009G237100 Sobic007G009200--Sobic009G237100 Sobic007G009200--Sobic003G024300 Sobic006G207800 Sobic006G207800 Sobic007G009200--Sobic006G207800 Sobic007G009200--Sobic003G398800 Sobic006G238200 Sobic006G238200 Sobic007G009200--Sobic006G238200 Sobic001G102800 Sobic001G102800 Sobic007G009200--Sobic001G102800 Sobic006G077400 Sobic006G077400 Sobic007G009200--Sobic006G077400 Sobic010G201700 Sobic010G201700 Sobic007G009200--Sobic010G201700 Sobic010G035400 Sobic010G035400 Sobic007G009200--Sobic010G035400 Sobic003G024300--Sobic007G009200 Sobic003G024300--Sobic006G077400 Sobic003G024300--Sobic001G329400 Sobic001G491000 Sobic001G491000 Sobic003G024300--Sobic001G491000 Sobic003G024300--Sobic009G104800 Sobic003G024300--Sobic003G398800 Sobic003G024300--Sobic004G125700 Sobic007G161500 Sobic007G161500 Sobic003G024300--Sobic007G161500 Sobic003G024300--Sobic010G201700 Sobic003G431700 Sobic003G431700 Sobic005G089600--Sobic003G431700 Sobic005G089600--Sobic003G367500 Sobic005G089600--Sobic008G053200 Sobic005G089600--Sobic003G398800 Sobic005G089600--Sobic002G324500 Sobic005G089600--Sobic003G431900 Sobic005G089600--Sobic001G519800 Sobic005G089600--Sobic002G036000 Sobic003G371250 Sobic003G371250 Sobic005G089600--Sobic003G371250
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.