Gene annotation
Transcriptome id Sobic.001G134100.2
Synonym Sb01g011710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
5-AMP-activated protein kinase-related, putative, expressed
UniProt A0A1Z5S5H1
Pfam PF16561
Panther DB PTHR10343 PTHR10343:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G27070 : 5\'-AMP-activated protein kinase-related
RAP-DB (Rice) LOC_Os03g48170.1 : 5-AMP-activated protein kinase-related, putative, expressed
MaizeGDB (Corn) Zm00025a017094 , Zm00025a007622
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G134100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
2 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
3 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
4 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.004G154200 expressed protein -
6 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
7 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
8 Sobic.010G039500 genetic modifier, putative, expressed -
9 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
12 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
13 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
15 Sobic.007G142200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
16 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
18 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
19 Sobic.005G101300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
20 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase


Gene co-expression network
sample Sobic001G134100 Sobic001G134100 Sobic003G367500 Sobic003G367500 Sobic001G134100--Sobic003G367500 Sobic001G329400 Sobic001G329400 Sobic001G134100--Sobic001G329400 Sobic005G231500 Sobic005G231500 Sobic001G134100--Sobic005G231500 Sobic007G105500 Sobic007G105500 Sobic001G134100--Sobic007G105500 Sobic004G154200 Sobic004G154200 Sobic001G134100--Sobic004G154200 Sobic010G085100 Sobic010G085100 Sobic001G134100--Sobic010G085100 Sobic008G117000 Sobic008G117000 Sobic001G134100--Sobic008G117000 Sobic010G039500 Sobic010G039500 Sobic001G134100--Sobic010G039500 Sobic004G215800 Sobic004G215800 Sobic001G134100--Sobic004G215800 Sobic003G367500--Sobic004G215800 Sobic003G367500--Sobic007G105500 Sobic003G398800 Sobic003G398800 Sobic003G367500--Sobic003G398800 Sobic003G367500--Sobic004G154200 Sobic003G367500--Sobic010G039500 Sobic002G324500 Sobic002G324500 Sobic003G367500--Sobic002G324500 Sobic003G127800 Sobic003G127800 Sobic003G367500--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic003G367500--Sobic004G059800 Sobic005G089600 Sobic005G089600 Sobic003G367500--Sobic005G089600 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic005G231500--Sobic003G367500 Sobic010G251700 Sobic010G251700 Sobic005G231500--Sobic010G251700 Sobic005G206300 Sobic005G206300 Sobic005G231500--Sobic005G206300 Sobic005G231500--Sobic004G154200 Sobic005G231500--Sobic007G105500 Sobic005G231500--Sobic001G329400 Sobic005G231500--Sobic001G134100 Sobic004G356400 Sobic004G356400 Sobic005G231500--Sobic004G356400 Sobic005G231500--Sobic004G215800 Sobic007G105500--Sobic004G215800 Sobic003G036200 Sobic003G036200 Sobic007G105500--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic007G105500--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic005G101200 Sobic005G101200 Sobic007G105500--Sobic005G101200 Sobic009G256100 Sobic009G256100 Sobic007G105500--Sobic009G256100 Sobic008G033000 Sobic008G033000 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic004G154200--Sobic003G367500 Sobic004G154200--Sobic003G185900 Sobic004G154200--Sobic003G398800 Sobic004G154200--Sobic007G105500 Sobic010G067100 Sobic010G067100 Sobic004G154200--Sobic010G067100 Sobic004G154200--Sobic005G231500 Sobic004G154200--Sobic010G085100 Sobic004G154200--Sobic003G127800 Sobic004G154200--Sobic001G329400 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic010G085100--Sobic004G154200 Sobic008G117000--Sobic002G324500 Sobic001G073900 Sobic001G073900 Sobic008G117000--Sobic001G073900 Sobic008G117000--Sobic003G036200 Sobic008G117000--Sobic001G134100 Sobic008G117000--Sobic004G215800 Sobic008G117000--Sobic003G367500 Sobic008G117000--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic008G117000--Sobic003G332700 Sobic008G117000--Sobic003G185900 Sobic010G039500--Sobic003G127800 Sobic003G005000 Sobic003G005000 Sobic010G039500--Sobic003G005000 Sobic010G039500--Sobic003G367500 Sobic010G039500--Sobic003G398800 Sobic005G101300 Sobic005G101300 Sobic010G039500--Sobic005G101300 Sobic010G039500--Sobic003G024300 Sobic010G039500--Sobic007G161500 Sobic010G039500--Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic010G039500--Sobic006G238200 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G215800--Sobic003G097600 Sobic004G112100 Sobic004G112100 Sobic004G215800--Sobic004G112100
Octagon: transcription factors


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