Gene annotation
Transcriptome id Sobic.010G249700.1
Synonym Sb10g028800
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1W0VUL8
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF641
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46610 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os12g18640.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a041789
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
5 Sobic.009G256100 expressed protein -
6 Sobic.010G255300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
7 Sobic.003G282000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@suppressor of phythchrome A, putative, expressed -
8 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
9 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
11 Sobic.010G039500 genetic modifier, putative, expressed -
12 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
13 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
14 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
15 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G005000 expressed protein -
17 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
18 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
19 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
20 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1


Gene co-expression network
sample Sobic010G249700 Sobic010G249700 Sobic001G017300 Sobic001G017300 Sobic010G249700--Sobic001G017300 Sobic005G101200 Sobic005G101200 Sobic010G249700--Sobic005G101200 Sobic007G105500 Sobic007G105500 Sobic010G249700--Sobic007G105500 Sobic006G093800 Sobic006G093800 Sobic010G249700--Sobic006G093800 Sobic009G256100 Sobic009G256100 Sobic010G249700--Sobic009G256100 Sobic010G255300 Sobic010G255300 Sobic010G249700--Sobic010G255300 Sobic003G282000 Sobic003G282000 Sobic010G249700--Sobic003G282000 Sobic002G382700 Sobic002G382700 Sobic010G249700--Sobic002G382700 Sobic004G356400 Sobic004G356400 Sobic010G249700--Sobic004G356400 Sobic006G158100 Sobic006G158100 Sobic001G017300--Sobic006G158100 Sobic001G017300--Sobic004G356400 Sobic001G017300--Sobic006G093800 Sobic001G017300--Sobic010G249700 Sobic007G136200 Sobic007G136200 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic001G017300--Sobic005G101200 Sobic001G169900 Sobic001G169900 Sobic001G017300--Sobic001G169900 Sobic010G002700 Sobic010G002700 Sobic001G017300--Sobic010G002700 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic009G038900 Sobic009G038900 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic010G085100 Sobic010G085100 Sobic005G101200--Sobic010G085100 Sobic004G281800 Sobic004G281800 Sobic005G101200--Sobic004G281800 Sobic004G215800 Sobic004G215800 Sobic007G105500--Sobic004G215800 Sobic003G036200 Sobic003G036200 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic008G033000 Sobic008G033000 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic006G093800--Sobic001G017300 Sobic006G093800--Sobic010G249700 Sobic006G093800--Sobic004G356400 Sobic001G134100 Sobic001G134100 Sobic006G093800--Sobic001G134100 Sobic006G093800--Sobic005G101200 Sobic006G093800--Sobic010G085100 Sobic006G093800--Sobic004G189800 Sobic004G027600 Sobic004G027600 Sobic006G093800--Sobic004G027600 Sobic006G093800--Sobic007G136200 Sobic010G104800 Sobic010G104800 Sobic009G256100--Sobic010G104800 Sobic006G153400 Sobic006G153400 Sobic009G256100--Sobic006G153400 Sobic002G390100 Sobic002G390100 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic008G129900 Sobic008G129900 Sobic009G256100--Sobic008G129900 Sobic010G255300--Sobic007G105500 Sobic010G255300--Sobic010G249700 Sobic009G015100 Sobic009G015100 Sobic010G255300--Sobic009G015100 Sobic010G255300--Sobic005G101200 Sobic010G255300--Sobic003G367500 Sobic010G255300--Sobic002G404800 Sobic005G206300 Sobic005G206300 Sobic010G255300--Sobic005G206300 Sobic010G255300--Sobic004G356400 Sobic010G255300--Sobic003G036200 Sobic003G282000--Sobic010G249700 Sobic003G282000--Sobic005G101200 Sobic003G282000--Sobic002G404800 Sobic003G282000--Sobic004G281800 Sobic004G312600 Sobic004G312600 Sobic003G282000--Sobic004G312600 Sobic008G038500 Sobic008G038500 Sobic003G282000--Sobic008G038500 Sobic003G282000--Sobic009G038900 Sobic004G322700 Sobic004G322700 Sobic003G282000--Sobic004G322700 Sobic003G282000--Sobic007G058100 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic002G382700--Sobic001G258200 Sobic006G090100 Sobic006G090100 Sobic002G382700--Sobic006G090100 Sobic003G341300 Sobic003G341300 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic002G382700--Sobic007G058100 Sobic001G077300 Sobic001G077300 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic007G227100 Sobic007G227100 Sobic002G382700--Sobic007G227100 Sobic004G356400--Sobic001G017300 Sobic004G356400--Sobic005G101200 Sobic004G356400--Sobic006G158100 Sobic004G356400--Sobic003G185900 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G356400--Sobic004G189800 Sobic004G356400--Sobic001G258200
Octagon: transcription factors


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