Gene annotation
Transcriptome id Sobic.010G255300.1,Sobic.010G255300.2
Synonym Sb10g029280, HCF173
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Complex I intermediate-associated protein 30 domain containing protein, putative, expressed
UniProt C5Z9A6
Pfam PF08547 PF05368 PF13460
Panther DB PTHR10366 PTHR10366:SF343
NCBI CDD KOG1203; Predicted dehydrogenase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16720 : high chlorophyll fluorescence phenotype 173
RAP-DB (Rice) LOC_Os06g49120.1 : Complex I intermediate-associated protein 30 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018408 , Zm00025a018409
Brachypodium KQK17449
Barley HORVU7Hr1G096250.13 , HORVU7Hr1G096250.12 , HORVU7Hr1G096250.11 , HORVU7Hr1G096250.10 , HORVU7Hr1G096250.17 , HORVU7Hr1G096250.16 , HORVU7Hr1G096250.15 , HORVU7Hr1G096250.14 , HORVU7Hr1G096250.1 , HORVU7Hr1G096250.9 , HORVU7Hr1G096250.8 , HORVU7Hr1G096250.3 , HORVU7Hr1G096250.2 , HORVU7Hr1G096250.7 , HORVU7Hr1G096250.6 , HORVU7Hr1G096250.5 , HORVU7Hr1G096250.4
Wheat TraesCS7A02G414600 , TraesCS7B02G314500 , TraesCS7D02G407700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.009G015100 ACT domain containing protein, expressed -
4 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
5 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
6 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
7 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
8 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
10 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
11 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
12 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
13 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
14 Sobic.010G002700 expressed protein -
15 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
16 Sobic.004G154200 expressed protein -
17 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
18 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
19 Sobic.005G118400 expressed protein -
20 Sobic.003G276300 zinc knuckle domain containing protein, expressed -


Gene co-expression network
sample Sobic010G255300 Sobic010G255300 Sobic007G105500 Sobic007G105500 Sobic010G255300--Sobic007G105500 Sobic010G249700 Sobic010G249700 Sobic010G255300--Sobic010G249700 Sobic009G015100 Sobic009G015100 Sobic010G255300--Sobic009G015100 Sobic005G101200 Sobic005G101200 Sobic010G255300--Sobic005G101200 Sobic003G367500 Sobic003G367500 Sobic010G255300--Sobic003G367500 Sobic002G404800 Sobic002G404800 Sobic010G255300--Sobic002G404800 Sobic005G206300 Sobic005G206300 Sobic010G255300--Sobic005G206300 Sobic004G356400 Sobic004G356400 Sobic010G255300--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic010G255300--Sobic003G036200 Sobic004G215800 Sobic004G215800 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic009G256100 Sobic009G256100 Sobic007G105500--Sobic009G256100 Sobic008G033000 Sobic008G033000 Sobic007G105500--Sobic008G033000 Sobic010G085100 Sobic010G085100 Sobic007G105500--Sobic010G085100 Sobic001G017300 Sobic001G017300 Sobic010G249700--Sobic001G017300 Sobic010G249700--Sobic005G101200 Sobic010G249700--Sobic007G105500 Sobic006G093800 Sobic006G093800 Sobic010G249700--Sobic006G093800 Sobic010G249700--Sobic009G256100 Sobic010G249700--Sobic010G255300 Sobic003G282000 Sobic003G282000 Sobic010G249700--Sobic003G282000 Sobic002G382700 Sobic002G382700 Sobic010G249700--Sobic002G382700 Sobic010G249700--Sobic004G356400 Sobic009G015100--Sobic007G105500 Sobic005G231500 Sobic005G231500 Sobic009G015100--Sobic005G231500 Sobic009G015100--Sobic005G206300 Sobic009G015100--Sobic010G255300 Sobic004G281800 Sobic004G281800 Sobic009G015100--Sobic004G281800 Sobic009G015100--Sobic005G101200 Sobic009G015100--Sobic010G085100 Sobic009G015100--Sobic002G404800 Sobic009G015100--Sobic004G356400 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic009G038900 Sobic009G038900 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic003G367500--Sobic004G215800 Sobic003G367500--Sobic007G105500 Sobic003G398800 Sobic003G398800 Sobic003G367500--Sobic003G398800 Sobic004G154200 Sobic004G154200 Sobic003G367500--Sobic004G154200 Sobic010G039500 Sobic010G039500 Sobic003G367500--Sobic010G039500 Sobic002G324500 Sobic002G324500 Sobic003G367500--Sobic002G324500 Sobic003G127800 Sobic003G127800 Sobic003G367500--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic003G367500--Sobic004G059800 Sobic005G089600 Sobic005G089600 Sobic003G367500--Sobic005G089600 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G390100 Sobic002G390100 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic005G206300--Sobic005G231500 Sobic005G206300--Sobic004G356400 Sobic005G206300--Sobic001G017300 Sobic003G391200 Sobic003G391200 Sobic005G206300--Sobic003G391200 Sobic005G206300--Sobic005G101200 Sobic005G206300--Sobic009G015100 Sobic005G206300--Sobic004G154200 Sobic005G206300--Sobic010G249700 Sobic003G313300 Sobic003G313300 Sobic005G206300--Sobic003G313300 Sobic004G356400--Sobic001G017300 Sobic004G356400--Sobic005G101200 Sobic006G158100 Sobic006G158100 Sobic004G356400--Sobic006G158100 Sobic004G356400--Sobic003G185900 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G356400--Sobic004G189800 Sobic004G356400--Sobic001G258200 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic003G036200--Sobic005G101200 Sobic003G036200--Sobic010G085100 Sobic003G036200--Sobic009G256100 Sobic008G033200 Sobic008G033200 Sobic003G036200--Sobic008G033200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.