Gene annotation
Transcriptome id Sobic.007G142200.1
Synonym HCT, Sb07g021760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transferase family protein, putative, expressed
UniProt C5YLM4
Pfam PF02458
Panther DB PTHR31642 PTHR31642:SF25
NCBI CDD -
KEGG Orthology K13065; E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT5G48930 : hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
RAP-DB (Rice) LOC_Os09g25460.1 : transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a031204 , Zm00025a005843
Brachypodium KQJ90283 , KQJ98426 , PNT64606
Barley HORVU7Hr1G118090.4 , HORVU7Hr1G118090.1 , HORVU7Hr1G118090.2 , HORVU7Hr1G118090.3
Wheat TraesCS7D02G524200 , TraesCS5B02G221700 , TraesCS7B02G455100 , TraesCS5D02G230500 , TraesCS5A02G222700 , TraesCS7A02G537300
Populus -


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cDNA sequences
Sobic.007G142200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G446100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
3 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
4 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
5 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
6 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
7 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
8 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
9 Sobic.004G027600 expressed protein -
10 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
11 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
13 Sobic.001G178250 - -
14 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
16 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
17 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
18 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.008G149000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
20 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)


Gene co-expression network
sample Sobic007G142200 Sobic007G142200 Sobic001G446100 Sobic001G446100 Sobic007G142200--Sobic001G446100 Sobic001G329400 Sobic001G329400 Sobic007G142200--Sobic001G329400 Sobic007G161500 Sobic007G161500 Sobic007G142200--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic007G142200--Sobic006G244000 Sobic010G251700 Sobic010G251700 Sobic007G142200--Sobic010G251700 Sobic001G134100 Sobic001G134100 Sobic007G142200--Sobic001G134100 Sobic004G112100 Sobic004G112100 Sobic007G142200--Sobic004G112100 Sobic005G231500 Sobic005G231500 Sobic007G142200--Sobic005G231500 Sobic004G027600 Sobic004G027600 Sobic007G142200--Sobic004G027600 Sobic001G446100--Sobic007G142200 Sobic001G446100--Sobic004G112100 Sobic009G048900 Sobic009G048900 Sobic001G446100--Sobic009G048900 Sobic001G446100--Sobic010G251700 Sobic006G153400 Sobic006G153400 Sobic001G446100--Sobic006G153400 Sobic001G446100--Sobic006G244000 Sobic009G256100 Sobic009G256100 Sobic001G446100--Sobic009G256100 Sobic001G446100--Sobic001G329400 Sobic001G446100--Sobic007G161500 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic001G329400--Sobic007G161500 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic005G056400 Sobic005G056400 Sobic007G161500--Sobic005G056400 Sobic007G161500--Sobic003G127800 Sobic010G188300 Sobic010G188300 Sobic007G161500--Sobic010G188300 Sobic007G161500--Sobic001G329400 Sobic003G370000 Sobic003G370000 Sobic007G161500--Sobic003G370000 Sobic007G161500--Sobic001G491000 Sobic001G289500 Sobic001G289500 Sobic007G161500--Sobic001G289500 Sobic004G305800 Sobic004G305800 Sobic007G161500--Sobic004G305800 Sobic007G161500--Sobic003G024300 Sobic006G244000--Sobic001G329400 Sobic006G244000--Sobic009G048900 Sobic003G256700 Sobic003G256700 Sobic006G244000--Sobic003G256700 Sobic006G244000--Sobic009G104800 Sobic008G104601 Sobic008G104601 Sobic006G244000--Sobic008G104601 Sobic004G125700 Sobic004G125700 Sobic006G244000--Sobic004G125700 Sobic003G431900 Sobic003G431900 Sobic006G244000--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic006G244000--Sobic001G406000 Sobic006G244000--Sobic001G134100 Sobic010G251700--Sobic004G027600 Sobic010G251700--Sobic005G231500 Sobic010G251700--Sobic004G112100 Sobic004G356400 Sobic004G356400 Sobic010G251700--Sobic004G356400 Sobic010G251700--Sobic001G446100 Sobic004G189800 Sobic004G189800 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic010G251700--Sobic001G329400 Sobic010G251700--Sobic007G142200 Sobic003G367500 Sobic003G367500 Sobic001G134100--Sobic003G367500 Sobic001G134100--Sobic001G329400 Sobic001G134100--Sobic005G231500 Sobic007G105500 Sobic007G105500 Sobic001G134100--Sobic007G105500 Sobic004G154200 Sobic004G154200 Sobic001G134100--Sobic004G154200 Sobic010G085100 Sobic010G085100 Sobic001G134100--Sobic010G085100 Sobic008G117000 Sobic008G117000 Sobic001G134100--Sobic008G117000 Sobic010G039500 Sobic010G039500 Sobic001G134100--Sobic010G039500 Sobic004G215800 Sobic004G215800 Sobic001G134100--Sobic004G215800 Sobic004G112100--Sobic006G153400 Sobic004G112100--Sobic009G048900 Sobic010G104800 Sobic010G104800 Sobic004G112100--Sobic010G104800 Sobic004G112100--Sobic004G215800 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic002G404800 Sobic002G404800 Sobic004G112100--Sobic002G404800 Sobic007G006400 Sobic007G006400 Sobic004G112100--Sobic007G006400 Sobic004G112100--Sobic004G027600 Sobic005G231500--Sobic003G367500 Sobic005G231500--Sobic010G251700 Sobic005G206300 Sobic005G206300 Sobic005G231500--Sobic005G206300 Sobic005G231500--Sobic004G154200 Sobic005G231500--Sobic007G105500 Sobic005G231500--Sobic001G329400 Sobic005G231500--Sobic001G134100 Sobic005G231500--Sobic004G356400 Sobic005G231500--Sobic004G215800 Sobic004G027600--Sobic004G189800 Sobic003G185900 Sobic003G185900 Sobic004G027600--Sobic003G185900 Sobic004G027600--Sobic010G251700 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic010G067100 Sobic010G067100 Sobic004G027600--Sobic010G067100 Sobic004G027600--Sobic010G085100 Sobic001G258200 Sobic001G258200 Sobic004G027600--Sobic001G258200 Sobic005G101200 Sobic005G101200 Sobic004G027600--Sobic005G101200
Octagon: transcription factors


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