Gene annotation
Transcriptome id Sobic.001G446100.3,Sobic.001G446100.2,Sobic.001G446100.4,Sobic.001G446100.1
Synonym Sb01g041920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5SAL8 , C5WRQ1
Pfam -
Panther DB PTHR10996 PTHR10996:SF136
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19400 : Erythronate-4-phosphate dehydrogenase family protein
RAP-DB (Rice) LOC_Os03g12700.2,LOC_Os03g12700.1 : expressed protein
MaizeGDB (Corn) Zm00025a052965
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G446100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G142200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
2 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
3 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
4 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
5 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
6 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
7 Sobic.009G256100 expressed protein -
8 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
9 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
10 Sobic.001G540300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
12 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.004G027600 expressed protein -
15 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
16 Sobic.003G021100 expressed protein -
17 Sobic.004G059800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT1@3 - Na+ transporter, expressed -
18 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
19 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
20 Sobic.001G178250 - -


Gene co-expression network
sample Sobic001G446100 Sobic001G446100 Sobic007G142200 Sobic007G142200 Sobic001G446100--Sobic007G142200 Sobic004G112100 Sobic004G112100 Sobic001G446100--Sobic004G112100 Sobic009G048900 Sobic009G048900 Sobic001G446100--Sobic009G048900 Sobic010G251700 Sobic010G251700 Sobic001G446100--Sobic010G251700 Sobic006G153400 Sobic006G153400 Sobic001G446100--Sobic006G153400 Sobic006G244000 Sobic006G244000 Sobic001G446100--Sobic006G244000 Sobic009G256100 Sobic009G256100 Sobic001G446100--Sobic009G256100 Sobic001G329400 Sobic001G329400 Sobic001G446100--Sobic001G329400 Sobic007G161500 Sobic007G161500 Sobic001G446100--Sobic007G161500 Sobic007G142200--Sobic001G446100 Sobic007G142200--Sobic001G329400 Sobic007G142200--Sobic007G161500 Sobic007G142200--Sobic006G244000 Sobic007G142200--Sobic010G251700 Sobic001G134100 Sobic001G134100 Sobic007G142200--Sobic001G134100 Sobic007G142200--Sobic004G112100 Sobic005G231500 Sobic005G231500 Sobic007G142200--Sobic005G231500 Sobic004G027600 Sobic004G027600 Sobic007G142200--Sobic004G027600 Sobic004G112100--Sobic006G153400 Sobic004G112100--Sobic009G048900 Sobic010G104800 Sobic010G104800 Sobic004G112100--Sobic010G104800 Sobic004G215800 Sobic004G215800 Sobic004G112100--Sobic004G215800 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic002G404800 Sobic002G404800 Sobic004G112100--Sobic002G404800 Sobic007G006400 Sobic007G006400 Sobic004G112100--Sobic007G006400 Sobic004G112100--Sobic004G027600 Sobic009G048900--Sobic004G112100 Sobic009G048900--Sobic006G244000 Sobic009G048900--Sobic006G153400 Sobic009G048900--Sobic010G104800 Sobic006G057866 Sobic006G057866 Sobic009G048900--Sobic006G057866 Sobic009G048900--Sobic001G446100 Sobic003G127800 Sobic003G127800 Sobic009G048900--Sobic003G127800 Sobic009G048900--Sobic004G215800 Sobic001G540300 Sobic001G540300 Sobic009G048900--Sobic001G540300 Sobic010G251700--Sobic004G027600 Sobic010G251700--Sobic005G231500 Sobic010G251700--Sobic004G112100 Sobic004G356400 Sobic004G356400 Sobic010G251700--Sobic004G356400 Sobic010G251700--Sobic001G446100 Sobic004G189800 Sobic004G189800 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic010G251700--Sobic001G329400 Sobic010G251700--Sobic007G142200 Sobic006G153400--Sobic010G104800 Sobic006G153400--Sobic009G256100 Sobic006G153400--Sobic007G006400 Sobic006G153400--Sobic004G112100 Sobic006G153400--Sobic003G127800 Sobic001G244600 Sobic001G244600 Sobic006G153400--Sobic001G244600 Sobic004G082300 Sobic004G082300 Sobic006G153400--Sobic004G082300 Sobic004G059800 Sobic004G059800 Sobic006G153400--Sobic004G059800 Sobic005G101200 Sobic005G101200 Sobic006G153400--Sobic005G101200 Sobic006G244000--Sobic001G329400 Sobic006G244000--Sobic009G048900 Sobic003G256700 Sobic003G256700 Sobic006G244000--Sobic003G256700 Sobic009G104800 Sobic009G104800 Sobic006G244000--Sobic009G104800 Sobic008G104601 Sobic008G104601 Sobic006G244000--Sobic008G104601 Sobic004G125700 Sobic004G125700 Sobic006G244000--Sobic004G125700 Sobic003G431900 Sobic003G431900 Sobic006G244000--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic006G244000--Sobic001G406000 Sobic006G244000--Sobic001G134100 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic002G390100 Sobic002G390100 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic007G105500 Sobic007G105500 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic008G129900 Sobic008G129900 Sobic009G256100--Sobic008G129900 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic001G329400--Sobic007G161500 Sobic001G329400--Sobic006G244000 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic001G329400--Sobic009G104800 Sobic005G056400 Sobic005G056400 Sobic007G161500--Sobic005G056400 Sobic007G161500--Sobic003G127800 Sobic010G188300 Sobic010G188300 Sobic007G161500--Sobic010G188300 Sobic007G161500--Sobic001G329400 Sobic003G370000 Sobic003G370000 Sobic007G161500--Sobic003G370000 Sobic007G161500--Sobic001G491000 Sobic001G289500 Sobic001G289500 Sobic007G161500--Sobic001G289500 Sobic004G305800 Sobic004G305800 Sobic007G161500--Sobic004G305800 Sobic007G161500--Sobic003G024300
Octagon: transcription factors


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