Gene annotation
Transcriptome id Sobic.006G205100.1
Synonym Sb06g027620
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YFH0
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G10650 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g51400.3 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009916 , Zm00025a056953
Brachypodium -
Barley HORVU2Hr1G101370.3 , HORVU2Hr1G101370.6 , HORVU2Hr1G101370.7 , HORVU2Hr1G101370.4 , HORVU2Hr1G101370.8 , HORVU2Hr1G101370.10
Wheat TraesCS2B02G456100 , TraesCS2D02G432800 , TraesCS2A02G437200
Populus -


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cDNA sequences
Sobic.006G205100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G073500 5-nucleotidase domain-containing protein, putative, expressed -
2 Sobic.002G273300 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
3 Sobic.001G207700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G484800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
5 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
7 Sobic.007G201500 rabGAP/TBC domain-containing protein, putative, expressed K18469: TBC1 domain family member 5
8 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
9 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
10 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.009G054900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@relA-SpoT like protein RSH4, putative, expressed -
12 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
13 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G126400 CPuORF27 - conserved peptide uORF-containing transcript, expressed K09338: homeobox-leucine zipper protein
15 Sobic.004G351700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS2-19 - C2H2 zinc finger protein, expressed -
16 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
17 Sobic.006G080800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLH1 - cellulose synthase-like family H, expressed -
18 Sobic.001G484400 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
19 Sobic.009G249600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional regulator, putative, expressed K07735: putative transcriptional regulator
20 Sobic.003G003600 similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed -


Gene co-expression network
sample Sobic006G205100 Sobic006G205100 Sobic001G073500 Sobic001G073500 Sobic006G205100--Sobic001G073500 Sobic002G273300 Sobic002G273300 Sobic006G205100--Sobic002G273300 Sobic001G207700 Sobic001G207700 Sobic006G205100--Sobic001G207700 Sobic001G484800 Sobic001G484800 Sobic006G205100--Sobic001G484800 Sobic010G176200 Sobic010G176200 Sobic006G205100--Sobic010G176200 Sobic004G343500 Sobic004G343500 Sobic006G205100--Sobic004G343500 Sobic007G201500 Sobic007G201500 Sobic006G205100--Sobic007G201500 Sobic003G004200 Sobic003G004200 Sobic006G205100--Sobic003G004200 Sobic001G065600 Sobic001G065600 Sobic006G205100--Sobic001G065600 Sobic001G073500--Sobic007G201500 Sobic009G011600 Sobic009G011600 Sobic001G073500--Sobic009G011600 Sobic003G434900 Sobic003G434900 Sobic001G073500--Sobic003G434900 Sobic005G149200 Sobic005G149200 Sobic001G073500--Sobic005G149200 Sobic006G080800 Sobic006G080800 Sobic001G073500--Sobic006G080800 Sobic001G073500--Sobic006G205100 Sobic006G087700 Sobic006G087700 Sobic001G073500--Sobic006G087700 Sobic001G375100 Sobic001G375100 Sobic001G073500--Sobic001G375100 Sobic010G205100 Sobic010G205100 Sobic001G073500--Sobic010G205100 Sobic002G273300--Sobic004G343500 Sobic007G047400 Sobic007G047400 Sobic002G273300--Sobic007G047400 Sobic009G249600 Sobic009G249600 Sobic002G273300--Sobic009G249600 Sobic001G239500 Sobic001G239500 Sobic002G273300--Sobic001G239500 Sobic001G305600 Sobic001G305600 Sobic002G273300--Sobic001G305600 Sobic002G273300--Sobic003G004200 Sobic004G351700 Sobic004G351700 Sobic002G273300--Sobic004G351700 Sobic009G054900 Sobic009G054900 Sobic002G273300--Sobic009G054900 Sobic003G009700 Sobic003G009700 Sobic002G273300--Sobic003G009700 Sobic001G207700--Sobic001G484800 Sobic001G207700--Sobic001G239500 Sobic001G207700--Sobic003G009700 Sobic006G225200 Sobic006G225200 Sobic001G207700--Sobic006G225200 Sobic001G207700--Sobic006G205100 Sobic002G121600 Sobic002G121600 Sobic001G207700--Sobic002G121600 Sobic002G394400 Sobic002G394400 Sobic001G207700--Sobic002G394400 Sobic006G173000 Sobic006G173000 Sobic001G207700--Sobic006G173000 Sobic002G401100 Sobic002G401100 Sobic001G207700--Sobic002G401100 Sobic001G484800--Sobic006G173000 Sobic001G484800--Sobic001G207700 Sobic001G484800--Sobic006G225200 Sobic004G065650 Sobic004G065650 Sobic001G484800--Sobic004G065650 Sobic001G118100 Sobic001G118100 Sobic001G484800--Sobic001G118100 Sobic004G208400 Sobic004G208400 Sobic001G484800--Sobic004G208400 Sobic002G291700 Sobic002G291700 Sobic001G484800--Sobic002G291700 Sobic001G484800--Sobic003G009700 Sobic008G013600 Sobic008G013600 Sobic001G484800--Sobic008G013600 Sobic008G130000 Sobic008G130000 Sobic010G176200--Sobic008G130000 Sobic003G313300 Sobic003G313300 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic004G356400 Sobic004G356400 Sobic010G176200--Sobic004G356400 Sobic003G229300 Sobic003G229300 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800 Sobic004G343500--Sobic002G273300 Sobic004G343500--Sobic009G054900 Sobic004G343500--Sobic001G239500 Sobic004G343500--Sobic009G249600 Sobic001G134100 Sobic001G134100 Sobic004G343500--Sobic001G134100 Sobic004G343500--Sobic004G351700 Sobic004G343500--Sobic007G047400 Sobic006G244000 Sobic006G244000 Sobic004G343500--Sobic006G244000 Sobic007G140800 Sobic007G140800 Sobic004G343500--Sobic007G140800 Sobic007G201500--Sobic001G073500 Sobic006G222600 Sobic006G222600 Sobic007G201500--Sobic006G222600 Sobic010G210500 Sobic010G210500 Sobic007G201500--Sobic010G210500 Sobic007G201500--Sobic001G375100 Sobic007G201500--Sobic010G205100 Sobic002G305000 Sobic002G305000 Sobic007G201500--Sobic002G305000 Sobic007G201500--Sobic010G176200 Sobic003G354600 Sobic003G354600 Sobic007G201500--Sobic003G354600 Sobic007G201500--Sobic008G130000 Sobic001G468700 Sobic001G468700 Sobic003G004200--Sobic001G468700 Sobic003G004200--Sobic003G009700 Sobic004G028500 Sobic004G028500 Sobic003G004200--Sobic004G028500 Sobic003G004200--Sobic001G065600 Sobic003G004200--Sobic004G356400 Sobic003G004200--Sobic003G313300 Sobic005G045000 Sobic005G045000 Sobic003G004200--Sobic005G045000 Sobic005G206300 Sobic005G206300 Sobic003G004200--Sobic005G206300 Sobic003G004200--Sobic001G017300 Sobic001G158900 Sobic001G158900 Sobic001G065600--Sobic001G158900 Sobic001G073900 Sobic001G073900 Sobic001G065600--Sobic001G073900 Sobic005G188600 Sobic005G188600 Sobic001G065600--Sobic005G188600 Sobic006G010900 Sobic006G010900 Sobic001G065600--Sobic006G010900 Sobic008G094000 Sobic008G094000 Sobic001G065600--Sobic008G094000 Sobic001G484400 Sobic001G484400 Sobic001G065600--Sobic001G484400 Sobic002G036000 Sobic002G036000 Sobic001G065600--Sobic002G036000 Sobic001G003200 Sobic001G003200 Sobic001G065600--Sobic001G003200 Sobic003G003600 Sobic003G003600 Sobic001G065600--Sobic003G003600
Octagon: transcription factors


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