Gene annotation
Transcriptome id Sobic.001G207700.1
Synonym Sb01g018380
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WXC5
Pfam PF05623
Panther DB PTHR31343 PTHR31343:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03610 : Protein of unknown function (DUF789)
RAP-DB (Rice) LOC_Os10g35150.1 : expressed protein
MaizeGDB (Corn) Zm00025a006489 , Zm00025a017533
Brachypodium KQJ97269
Barley HORVU1Hr1G043710.2 , HORVU1Hr1G043710.3 , HORVU1Hr1G043710.1 , HORVU1Hr1G043710.6 , HORVU1Hr1G043710.7 , HORVU1Hr1G043710.4 , HORVU1Hr1G043710.5 , HORVU1Hr1G043710.8 , HORVU1Hr1G043710.9 , HORVU1Hr1G043710.10 , HORVU1Hr1G043710.11
Wheat TraesCS1A02G164600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G207700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G484800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
2 Sobic.001G239500 starch synthase, putative, expressed K00703: starch synthase
3 Sobic.003G009700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.006G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cyclin, putative, expressed -
5 Sobic.006G205100 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.002G121600 myb-like DNA-binding domain containing protein, expressed -
7 Sobic.002G394400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.006G173000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
9 Sobic.002G401100 methyltransferase, putative, expressed -
10 Sobic.003G004200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed -
11 Sobic.009G191100 expressed protein -
12 Sobic.002G358500 - -
13 Sobic.002G273300 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
14 Sobic.001G386300 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1
16 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
17 Sobic.004G299000 expressed protein -
18 Sobic.007G173200 IDD5(PubMedID : 24676859)@ZOS8-12 - C2H2 zinc finger protein, expressed -
19 Sobic.009G249600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional regulator, putative, expressed K07735: putative transcriptional regulator
20 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit


Gene co-expression network
sample Sobic001G207700 Sobic001G207700 Sobic001G484800 Sobic001G484800 Sobic001G207700--Sobic001G484800 Sobic001G239500 Sobic001G239500 Sobic001G207700--Sobic001G239500 Sobic003G009700 Sobic003G009700 Sobic001G207700--Sobic003G009700 Sobic006G225200 Sobic006G225200 Sobic001G207700--Sobic006G225200 Sobic006G205100 Sobic006G205100 Sobic001G207700--Sobic006G205100 Sobic002G121600 Sobic002G121600 Sobic001G207700--Sobic002G121600 Sobic002G394400 Sobic002G394400 Sobic001G207700--Sobic002G394400 Sobic006G173000 Sobic006G173000 Sobic001G207700--Sobic006G173000 Sobic002G401100 Sobic002G401100 Sobic001G207700--Sobic002G401100 Sobic001G484800--Sobic006G173000 Sobic001G484800--Sobic001G207700 Sobic001G484800--Sobic006G225200 Sobic004G065650 Sobic004G065650 Sobic001G484800--Sobic004G065650 Sobic001G118100 Sobic001G118100 Sobic001G484800--Sobic001G118100 Sobic004G208400 Sobic004G208400 Sobic001G484800--Sobic004G208400 Sobic002G291700 Sobic002G291700 Sobic001G484800--Sobic002G291700 Sobic001G484800--Sobic003G009700 Sobic008G013600 Sobic008G013600 Sobic001G484800--Sobic008G013600 Sobic004G343500 Sobic004G343500 Sobic001G239500--Sobic004G343500 Sobic002G273300 Sobic002G273300 Sobic001G239500--Sobic002G273300 Sobic001G514800 Sobic001G514800 Sobic001G239500--Sobic001G514800 Sobic008G168300 Sobic008G168300 Sobic001G239500--Sobic008G168300 Sobic003G004200 Sobic003G004200 Sobic001G239500--Sobic003G004200 Sobic009G054900 Sobic009G054900 Sobic001G239500--Sobic009G054900 Sobic001G239500--Sobic001G207700 Sobic009G249600 Sobic009G249600 Sobic001G239500--Sobic009G249600 Sobic007G047400 Sobic007G047400 Sobic001G239500--Sobic007G047400 Sobic003G009700--Sobic006G225200 Sobic003G009700--Sobic003G004200 Sobic003G009700--Sobic009G249600 Sobic003G009700--Sobic002G273300 Sobic004G327700 Sobic004G327700 Sobic003G009700--Sobic004G327700 Sobic005G045000 Sobic005G045000 Sobic003G009700--Sobic005G045000 Sobic003G009700--Sobic001G484800 Sobic003G009700--Sobic001G239500 Sobic003G009700--Sobic001G207700 Sobic006G225200--Sobic001G118100 Sobic006G225200--Sobic003G009700 Sobic006G225200--Sobic001G484800 Sobic006G225200--Sobic006G173000 Sobic002G385700 Sobic002G385700 Sobic006G225200--Sobic002G385700 Sobic006G225200--Sobic002G291700 Sobic006G225200--Sobic003G004200 Sobic001G233400 Sobic001G233400 Sobic006G225200--Sobic001G233400 Sobic007G173200 Sobic007G173200 Sobic006G225200--Sobic007G173200 Sobic001G073500 Sobic001G073500 Sobic006G205100--Sobic001G073500 Sobic006G205100--Sobic002G273300 Sobic006G205100--Sobic001G207700 Sobic006G205100--Sobic001G484800 Sobic010G176200 Sobic010G176200 Sobic006G205100--Sobic010G176200 Sobic006G205100--Sobic004G343500 Sobic007G201500 Sobic007G201500 Sobic006G205100--Sobic007G201500 Sobic006G205100--Sobic003G004200 Sobic001G065600 Sobic001G065600 Sobic006G205100--Sobic001G065600 Sobic001G356500 Sobic001G356500 Sobic002G121600--Sobic001G356500 Sobic009G191100 Sobic009G191100 Sobic002G121600--Sobic009G191100 Sobic002G133400 Sobic002G133400 Sobic002G121600--Sobic002G133400 Sobic003G148000 Sobic003G148000 Sobic002G121600--Sobic003G148000 Sobic002G343901 Sobic002G343901 Sobic002G121600--Sobic002G343901 Sobic001G456900 Sobic001G456900 Sobic002G121600--Sobic001G456900 Sobic003G332800 Sobic003G332800 Sobic002G121600--Sobic003G332800 Sobic007G065400 Sobic007G065400 Sobic002G121600--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic002G121600--Sobic008G113100 Sobic001G153200 Sobic001G153200 Sobic002G394400--Sobic001G153200 Sobic002G394400--Sobic001G207700 Sobic001G463000 Sobic001G463000 Sobic002G394400--Sobic001G463000 Sobic003G389700 Sobic003G389700 Sobic002G394400--Sobic003G389700 Sobic001G421300 Sobic001G421300 Sobic002G394400--Sobic001G421300 Sobic001G421900 Sobic001G421900 Sobic002G394400--Sobic001G421900 Sobic002G294500 Sobic002G294500 Sobic002G394400--Sobic002G294500 Sobic001G472600 Sobic001G472600 Sobic002G394400--Sobic001G472600 Sobic003G269200 Sobic003G269200 Sobic002G394400--Sobic003G269200 Sobic006G173000--Sobic004G208400 Sobic006G173000--Sobic002G291700 Sobic006G173000--Sobic001G484800 Sobic006G173000--Sobic004G065650 Sobic007G037100 Sobic007G037100 Sobic006G173000--Sobic007G037100 Sobic005G110472 Sobic005G110472 Sobic006G173000--Sobic005G110472 Sobic004G188400 Sobic004G188400 Sobic006G173000--Sobic004G188400 Sobic006G173000--Sobic006G225200 Sobic001G532000 Sobic001G532000 Sobic006G173000--Sobic001G532000 Sobic009G249900 Sobic009G249900 Sobic002G401100--Sobic009G249900 Sobic003G345400 Sobic003G345400 Sobic002G401100--Sobic003G345400 Sobic002G054300 Sobic002G054300 Sobic002G401100--Sobic002G054300 Sobic004G028500 Sobic004G028500 Sobic002G401100--Sobic004G028500 Sobic002G401100--Sobic007G173200 Sobic010G184100 Sobic010G184100 Sobic002G401100--Sobic010G184100 Sobic004G164400 Sobic004G164400 Sobic002G401100--Sobic004G164400 Sobic009G034200 Sobic009G034200 Sobic002G401100--Sobic009G034200 Sobic002G401100--Sobic001G207700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.