Gene annotation
Transcriptome id Sobic.002G401100.1
Synonym Sb02g041600
Functional annotation methyltransferase, putative, expressed
UniProt C5X454
Pfam PF08241
Panther DB PTHR12176 PTHR12176:SF14
NCBI CDD KOG1271; Methyltransferases
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G60910 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os07g46340.1 : methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a049005
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G401100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G249900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14506: jasmonic acid-amino synthetase
2 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
3 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1
4 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit
5 Sobic.007G173200 IDD5(PubMedID : 24676859)@ZOS8-12 - C2H2 zinc finger protein, expressed -
6 Sobic.010G184100 mitochondrial carrier protein, putative, expressed -
7 Sobic.004G164400 expressed protein -
8 Sobic.009G034200 CBL-interacting protein kinase 1(PubMedID : 26320239)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
9 Sobic.001G207700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G299000 expressed protein -
11 Sobic.001G297500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
12 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -
13 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
14 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
15 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
16 Sobic.001G484800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
17 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
18 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
19 Sobic.001G100100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@GATA transcription factor 25, putative, expressed -
20 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha


Gene co-expression network
sample Sobic002G401100 Sobic002G401100 Sobic009G249900 Sobic009G249900 Sobic002G401100--Sobic009G249900 Sobic003G345400 Sobic003G345400 Sobic002G401100--Sobic003G345400 Sobic002G054300 Sobic002G054300 Sobic002G401100--Sobic002G054300 Sobic004G028500 Sobic004G028500 Sobic002G401100--Sobic004G028500 Sobic007G173200 Sobic007G173200 Sobic002G401100--Sobic007G173200 Sobic010G184100 Sobic010G184100 Sobic002G401100--Sobic010G184100 Sobic004G164400 Sobic004G164400 Sobic002G401100--Sobic004G164400 Sobic009G034200 Sobic009G034200 Sobic002G401100--Sobic009G034200 Sobic001G207700 Sobic001G207700 Sobic002G401100--Sobic001G207700 Sobic009G249900--Sobic002G401100 Sobic002G204600 Sobic002G204600 Sobic009G249900--Sobic002G204600 Sobic009G249900--Sobic003G345400 Sobic001G048100 Sobic001G048100 Sobic009G249900--Sobic001G048100 Sobic003G048500 Sobic003G048500 Sobic009G249900--Sobic003G048500 Sobic007G171400 Sobic007G171400 Sobic009G249900--Sobic007G171400 Sobic009G249900--Sobic002G054300 Sobic007G150100 Sobic007G150100 Sobic009G249900--Sobic007G150100 Sobic009G249900--Sobic010G184100 Sobic009G205200 Sobic009G205200 Sobic003G345400--Sobic009G205200 Sobic001G107500 Sobic001G107500 Sobic003G345400--Sobic001G107500 Sobic002G350300 Sobic002G350300 Sobic003G345400--Sobic002G350300 Sobic004G121100 Sobic004G121100 Sobic003G345400--Sobic004G121100 Sobic003G345400--Sobic009G034200 Sobic006G228500 Sobic006G228500 Sobic003G345400--Sobic006G228500 Sobic001G333200 Sobic001G333200 Sobic003G345400--Sobic001G333200 Sobic001G119300 Sobic001G119300 Sobic003G345400--Sobic001G119300 Sobic010G056200 Sobic010G056200 Sobic003G345400--Sobic010G056200 Sobic001G080700 Sobic001G080700 Sobic002G054300--Sobic001G080700 Sobic001G386300 Sobic001G386300 Sobic002G054300--Sobic001G386300 Sobic001G375700 Sobic001G375700 Sobic002G054300--Sobic001G375700 Sobic001G332500 Sobic001G332500 Sobic002G054300--Sobic001G332500 Sobic001G392300 Sobic001G392300 Sobic002G054300--Sobic001G392300 Sobic002G054300--Sobic009G205200 Sobic002G161800 Sobic002G161800 Sobic002G054300--Sobic002G161800 Sobic008G179700 Sobic008G179700 Sobic002G054300--Sobic008G179700 Sobic010G251000 Sobic010G251000 Sobic002G054300--Sobic010G251000 Sobic001G468700 Sobic001G468700 Sobic004G028500--Sobic001G468700 Sobic003G313300 Sobic003G313300 Sobic004G028500--Sobic003G313300 Sobic001G100100 Sobic001G100100 Sobic004G028500--Sobic001G100100 Sobic003G017100 Sobic003G017100 Sobic004G028500--Sobic003G017100 Sobic010G002700 Sobic010G002700 Sobic004G028500--Sobic010G002700 Sobic005G045000 Sobic005G045000 Sobic004G028500--Sobic005G045000 Sobic002G006600 Sobic002G006600 Sobic004G028500--Sobic002G006600 Sobic003G004200 Sobic003G004200 Sobic004G028500--Sobic003G004200 Sobic001G198100 Sobic001G198100 Sobic004G028500--Sobic001G198100 Sobic009G191100 Sobic009G191100 Sobic007G173200--Sobic009G191100 Sobic001G118100 Sobic001G118100 Sobic007G173200--Sobic001G118100 Sobic001G532000 Sobic001G532000 Sobic007G173200--Sobic001G532000 Sobic006G173000 Sobic006G173000 Sobic007G173200--Sobic006G173000 Sobic006G225200 Sobic006G225200 Sobic007G173200--Sobic006G225200 Sobic007G113800 Sobic007G113800 Sobic007G173200--Sobic007G113800 Sobic009G140500 Sobic009G140500 Sobic007G173200--Sobic009G140500 Sobic007G173200--Sobic002G401100 Sobic004G113800 Sobic004G113800 Sobic007G173200--Sobic004G113800 Sobic002G110700 Sobic002G110700 Sobic010G184100--Sobic002G110700 Sobic009G165800 Sobic009G165800 Sobic010G184100--Sobic009G165800 Sobic010G184100--Sobic001G048100 Sobic010G184100--Sobic002G054300 Sobic010G184100--Sobic001G080700 Sobic001G391600 Sobic001G391600 Sobic010G184100--Sobic001G391600 Sobic007G159500 Sobic007G159500 Sobic010G184100--Sobic007G159500 Sobic010G184100--Sobic002G401100 Sobic010G184100--Sobic001G386300 Sobic004G164400--Sobic006G228500 Sobic007G108500 Sobic007G108500 Sobic004G164400--Sobic007G108500 Sobic004G174400 Sobic004G174400 Sobic004G164400--Sobic004G174400 Sobic004G164400--Sobic002G006600 Sobic002G104100 Sobic002G104100 Sobic004G164400--Sobic002G104100 Sobic006G105400 Sobic006G105400 Sobic004G164400--Sobic006G105400 Sobic001G318432 Sobic001G318432 Sobic004G164400--Sobic001G318432 Sobic006G274600 Sobic006G274600 Sobic004G164400--Sobic006G274600 Sobic001G126100 Sobic001G126100 Sobic004G164400--Sobic001G126100 Sobic009G034200--Sobic003G345400 Sobic009G034200--Sobic007G113800 Sobic009G034200--Sobic009G140500 Sobic009G034200--Sobic006G228500 Sobic003G179201 Sobic003G179201 Sobic009G034200--Sobic003G179201 Sobic002G399100 Sobic002G399100 Sobic009G034200--Sobic002G399100 Sobic009G034200--Sobic010G056200 Sobic001G067850 Sobic001G067850 Sobic009G034200--Sobic001G067850 Sobic009G034200--Sobic004G113800 Sobic001G484800 Sobic001G484800 Sobic001G207700--Sobic001G484800 Sobic001G239500 Sobic001G239500 Sobic001G207700--Sobic001G239500 Sobic003G009700 Sobic003G009700 Sobic001G207700--Sobic003G009700 Sobic001G207700--Sobic006G225200 Sobic006G205100 Sobic006G205100 Sobic001G207700--Sobic006G205100 Sobic002G121600 Sobic002G121600 Sobic001G207700--Sobic002G121600 Sobic002G394400 Sobic002G394400 Sobic001G207700--Sobic002G394400 Sobic001G207700--Sobic006G173000 Sobic001G207700--Sobic002G401100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.