Gene annotation
Transcriptome id Sobic.009G249900.1,Sobic.009G249900.2,Sobic.009G249900.3
Synonym Gretchen Hagen3, SbGH3-16, Sb09g030050, FIN219, JAR1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt A0A1Z5R4Y1 , C5YWK7 , A0A1Z5R458
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF3
NCBI CDD -
KEGG Orthology K14506; jasmonic acid-amino synthetase
Gene Ontology GO:0009864; induced systemic resistance, jasmonic acid mediated signaling pathway GO:0009694jasmonic acid metabolic process GO:0009611response to wounding


Orthologs (automatic annotation)
TAIR AT2G46370 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os05g50890.1 : OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a036737
Brachypodium KQK04638
Barley -
Wheat TraesCS1B02G459500 , TraesCS1B02G459500 , TraesCS1A02G425100 , TraesCS1A02G425100 , TraesCS1D02G434100 , TraesCS1D02G434100
Populus -


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cDNA sequences
Sobic.009G249900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G401100 methyltransferase, putative, expressed -
2 Sobic.002G204600 expressed protein -
3 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
4 Sobic.001G048100 OsAPRL5 adenosine 5\'-phosphosulfate reductase-like OsAPRL5, expressed -
5 Sobic.003G048500 acyl-protein thioesterase, putative, expressed K06130: lysophospholipase II
6 Sobic.007G171400 low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed K01104: protein-tyrosine phosphatase
7 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1
8 Sobic.007G150100 HD domain containing protein, putative, expressed -
9 Sobic.010G184100 mitochondrial carrier protein, putative, expressed -
10 Sobic.003G319800 bHelix-loop-helix transcription factor, putative, expressed -
11 Sobic.004G274700 SNARE associated Golgi protein, putative, expressed -
12 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
13 Sobic.009G034200 CBL-interacting protein kinase 1(PubMedID : 26320239)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
14 Sobic.003G327100 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
15 Sobic.010G184600 Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
16 Sobic.001G530500 per1-like family protein, putative, expressed -
17 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.004G027900 - -
19 Sobic.002G172700 Galactose mutarotase-like superfamily protein(PubMedID : 26465154)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
20 Sobic.007G173200 IDD5(PubMedID : 24676859)@ZOS8-12 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic009G249900 Sobic009G249900 Sobic002G401100 Sobic002G401100 Sobic009G249900--Sobic002G401100 Sobic002G204600 Sobic002G204600 Sobic009G249900--Sobic002G204600 Sobic003G345400 Sobic003G345400 Sobic009G249900--Sobic003G345400 Sobic001G048100 Sobic001G048100 Sobic009G249900--Sobic001G048100 Sobic003G048500 Sobic003G048500 Sobic009G249900--Sobic003G048500 Sobic007G171400 Sobic007G171400 Sobic009G249900--Sobic007G171400 Sobic002G054300 Sobic002G054300 Sobic009G249900--Sobic002G054300 Sobic007G150100 Sobic007G150100 Sobic009G249900--Sobic007G150100 Sobic010G184100 Sobic010G184100 Sobic009G249900--Sobic010G184100 Sobic002G401100--Sobic009G249900 Sobic002G401100--Sobic003G345400 Sobic002G401100--Sobic002G054300 Sobic004G028500 Sobic004G028500 Sobic002G401100--Sobic004G028500 Sobic007G173200 Sobic007G173200 Sobic002G401100--Sobic007G173200 Sobic002G401100--Sobic010G184100 Sobic004G164400 Sobic004G164400 Sobic002G401100--Sobic004G164400 Sobic009G034200 Sobic009G034200 Sobic002G401100--Sobic009G034200 Sobic001G207700 Sobic001G207700 Sobic002G401100--Sobic001G207700 Sobic006G102400 Sobic006G102400 Sobic002G204600--Sobic006G102400 Sobic004G174400 Sobic004G174400 Sobic002G204600--Sobic004G174400 Sobic003G386600 Sobic003G386600 Sobic002G204600--Sobic003G386600 Sobic005G188600 Sobic005G188600 Sobic002G204600--Sobic005G188600 Sobic007G062500 Sobic007G062500 Sobic002G204600--Sobic007G062500 Sobic004G269000 Sobic004G269000 Sobic002G204600--Sobic004G269000 Sobic001G427300 Sobic001G427300 Sobic002G204600--Sobic001G427300 Sobic006G228500 Sobic006G228500 Sobic002G204600--Sobic006G228500 Sobic006G130800 Sobic006G130800 Sobic002G204600--Sobic006G130800 Sobic009G205200 Sobic009G205200 Sobic003G345400--Sobic009G205200 Sobic001G107500 Sobic001G107500 Sobic003G345400--Sobic001G107500 Sobic002G350300 Sobic002G350300 Sobic003G345400--Sobic002G350300 Sobic004G121100 Sobic004G121100 Sobic003G345400--Sobic004G121100 Sobic003G345400--Sobic009G034200 Sobic003G345400--Sobic006G228500 Sobic001G333200 Sobic001G333200 Sobic003G345400--Sobic001G333200 Sobic001G119300 Sobic001G119300 Sobic003G345400--Sobic001G119300 Sobic010G056200 Sobic010G056200 Sobic003G345400--Sobic010G056200 Sobic001G080700 Sobic001G080700 Sobic001G048100--Sobic001G080700 Sobic001G048100--Sobic010G184100 Sobic009G165800 Sobic009G165800 Sobic001G048100--Sobic009G165800 Sobic001G048100--Sobic004G121100 Sobic001G048100--Sobic007G171400 Sobic010G251000 Sobic010G251000 Sobic001G048100--Sobic010G251000 Sobic004G040900 Sobic004G040900 Sobic001G048100--Sobic004G040900 Sobic003G264200 Sobic003G264200 Sobic001G048100--Sobic003G264200 Sobic001G048100--Sobic004G269000 Sobic003G048500--Sobic001G048100 Sobic001G031100 Sobic001G031100 Sobic003G048500--Sobic001G031100 Sobic001G530500 Sobic001G530500 Sobic003G048500--Sobic001G530500 Sobic002G288200 Sobic002G288200 Sobic003G048500--Sobic002G288200 Sobic003G048500--Sobic003G264200 Sobic009G229200 Sobic009G229200 Sobic003G048500--Sobic009G229200 Sobic003G010400 Sobic003G010400 Sobic003G048500--Sobic003G010400 Sobic003G327100 Sobic003G327100 Sobic003G048500--Sobic003G327100 Sobic010G092300 Sobic010G092300 Sobic003G048500--Sobic010G092300 Sobic001G516901 Sobic001G516901 Sobic007G171400--Sobic001G516901 Sobic007G136200 Sobic007G136200 Sobic007G171400--Sobic007G136200 Sobic003G229300 Sobic003G229300 Sobic007G171400--Sobic003G229300 Sobic006G173600 Sobic006G173600 Sobic007G171400--Sobic006G173600 Sobic004G054400 Sobic004G054400 Sobic007G171400--Sobic004G054400 Sobic004G178100 Sobic004G178100 Sobic007G171400--Sobic004G178100 Sobic007G171400--Sobic001G048100 Sobic008G115900 Sobic008G115900 Sobic007G171400--Sobic008G115900 Sobic008G062400 Sobic008G062400 Sobic007G171400--Sobic008G062400 Sobic002G054300--Sobic001G080700 Sobic001G386300 Sobic001G386300 Sobic002G054300--Sobic001G386300 Sobic001G375700 Sobic001G375700 Sobic002G054300--Sobic001G375700 Sobic001G332500 Sobic001G332500 Sobic002G054300--Sobic001G332500 Sobic001G392300 Sobic001G392300 Sobic002G054300--Sobic001G392300 Sobic002G054300--Sobic009G205200 Sobic002G161800 Sobic002G161800 Sobic002G054300--Sobic002G161800 Sobic008G179700 Sobic008G179700 Sobic002G054300--Sobic008G179700 Sobic002G054300--Sobic010G251000 Sobic001G003200 Sobic001G003200 Sobic007G150100--Sobic001G003200 Sobic007G150100--Sobic006G173600 Sobic001G048400 Sobic001G048400 Sobic007G150100--Sobic001G048400 Sobic001G504400 Sobic001G504400 Sobic007G150100--Sobic001G504400 Sobic010G043800 Sobic010G043800 Sobic007G150100--Sobic010G043800 Sobic009G056700 Sobic009G056700 Sobic007G150100--Sobic009G056700 Sobic001G169900 Sobic001G169900 Sobic007G150100--Sobic001G169900 Sobic003G398800 Sobic003G398800 Sobic007G150100--Sobic003G398800 Sobic003G110800 Sobic003G110800 Sobic007G150100--Sobic003G110800 Sobic002G110700 Sobic002G110700 Sobic010G184100--Sobic002G110700 Sobic010G184100--Sobic009G165800 Sobic010G184100--Sobic001G048100 Sobic010G184100--Sobic002G054300 Sobic010G184100--Sobic001G080700 Sobic001G391600 Sobic001G391600 Sobic010G184100--Sobic001G391600 Sobic007G159500 Sobic007G159500 Sobic010G184100--Sobic007G159500 Sobic010G184100--Sobic002G401100 Sobic010G184100--Sobic001G386300
Octagon: transcription factors


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