Gene annotation
Transcriptome id Sobic.002G054300.1
Synonym ATGCN4, GCN4, Sb02g004540
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5XB25
Pfam PF00005
Panther DB PTHR19211 PTHR19211:SF57
NCBI CDD -
KEGG Orthology K06184; ATP-binding cassette, subfamily F, member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G54540 : general control non-repressible 4
RAP-DB (Rice) LOC_Os03g32630.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a045179 , Zm00025a016080
Brachypodium KQK14373
Barley HORVU1Hr1G088370.1 , HORVU1Hr1G088370.3 , HORVU1Hr1G088370.2 , HORVU1Hr1G088370.4 , HORVU1Hr1G088370.7 , HORVU1Hr1G088370.6 , HORVU1Hr1G088370.5 , HORVU1Hr1G088460.1 , HORVU3Hr1G086950.1
Wheat TraesCS7D02G054900
Populus -


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cDNA sequences
Sobic.002G054300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
2 Sobic.001G386300 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
4 Sobic.001G332500 WRKY81, expressed -
5 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
6 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
7 Sobic.002G161800 Myb-like DNA-binding domain containing protein, putative, expressed -
8 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
9 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
10 Sobic.004G121100 expressed protein -
11 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
12 Sobic.004G164400 expressed protein -
13 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
14 Sobic.010G184100 mitochondrial carrier protein, putative, expressed -
15 Sobic.006G200600 expressed protein -
16 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
17 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
18 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
19 Sobic.007G159500 uncharacterized protein, YigZ family, putative, expressed -
20 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2


Gene co-expression network
sample Sobic002G054300 Sobic002G054300 Sobic001G080700 Sobic001G080700 Sobic002G054300--Sobic001G080700 Sobic001G386300 Sobic001G386300 Sobic002G054300--Sobic001G386300 Sobic001G375700 Sobic001G375700 Sobic002G054300--Sobic001G375700 Sobic001G332500 Sobic001G332500 Sobic002G054300--Sobic001G332500 Sobic001G392300 Sobic001G392300 Sobic002G054300--Sobic001G392300 Sobic009G205200 Sobic009G205200 Sobic002G054300--Sobic009G205200 Sobic002G161800 Sobic002G161800 Sobic002G054300--Sobic002G161800 Sobic008G179700 Sobic008G179700 Sobic002G054300--Sobic008G179700 Sobic010G251000 Sobic010G251000 Sobic002G054300--Sobic010G251000 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic001G386300--Sobic002G054300 Sobic003G121300 Sobic003G121300 Sobic001G386300--Sobic003G121300 Sobic004G210800 Sobic004G210800 Sobic001G386300--Sobic004G210800 Sobic001G386300--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G386300--Sobic001G031100 Sobic001G386300--Sobic001G332500 Sobic003G316700 Sobic003G316700 Sobic001G386300--Sobic003G316700 Sobic010G029900 Sobic010G029900 Sobic001G386300--Sobic010G029900 Sobic002G126500 Sobic002G126500 Sobic001G386300--Sobic002G126500 Sobic004G084300 Sobic004G084300 Sobic001G375700--Sobic004G084300 Sobic001G375700--Sobic002G126500 Sobic001G281600 Sobic001G281600 Sobic001G375700--Sobic001G281600 Sobic003G197800 Sobic003G197800 Sobic001G375700--Sobic003G197800 Sobic001G107500 Sobic001G107500 Sobic001G375700--Sobic001G107500 Sobic007G136800 Sobic007G136800 Sobic001G375700--Sobic007G136800 Sobic007G054400 Sobic007G054400 Sobic001G375700--Sobic007G054400 Sobic008G113100 Sobic008G113100 Sobic001G375700--Sobic008G113100 Sobic001G227200 Sobic001G227200 Sobic001G375700--Sobic001G227200 Sobic001G332500--Sobic001G080700 Sobic001G122832 Sobic001G122832 Sobic001G332500--Sobic001G122832 Sobic003G253600 Sobic003G253600 Sobic001G332500--Sobic003G253600 Sobic001G332500--Sobic001G375700 Sobic001G332500--Sobic001G392300 Sobic003G221900 Sobic003G221900 Sobic001G332500--Sobic003G221900 Sobic001G332500--Sobic007G136800 Sobic003G398700 Sobic003G398700 Sobic001G332500--Sobic003G398700 Sobic006G185100 Sobic006G185100 Sobic001G332500--Sobic006G185100 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic004G121100 Sobic004G121100 Sobic009G205200--Sobic004G121100 Sobic009G205200--Sobic001G107500 Sobic002G350300 Sobic002G350300 Sobic009G205200--Sobic002G350300 Sobic007G104800 Sobic007G104800 Sobic009G205200--Sobic007G104800 Sobic009G205200--Sobic006G200600 Sobic003G345400 Sobic003G345400 Sobic009G205200--Sobic003G345400 Sobic001G119300 Sobic001G119300 Sobic009G205200--Sobic001G119300 Sobic003G248200 Sobic003G248200 Sobic009G205200--Sobic003G248200 Sobic009G205200--Sobic008G179700 Sobic002G161800--Sobic001G392300 Sobic002G161800--Sobic001G080700 Sobic002G161800--Sobic008G179700 Sobic002G161800--Sobic010G251000 Sobic002G161800--Sobic001G281600 Sobic006G008600 Sobic006G008600 Sobic002G161800--Sobic006G008600 Sobic002G161800--Sobic002G054300 Sobic002G161800--Sobic008G047800 Sobic002G161800--Sobic001G332500 Sobic008G179700--Sobic002G350300 Sobic008G179700--Sobic003G248200 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic008G179700--Sobic004G084300 Sobic003G401100 Sobic003G401100 Sobic008G179700--Sobic003G401100 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic010G251000--Sobic001G007000 Sobic010G251000--Sobic001G080700 Sobic010G251000--Sobic006G200600 Sobic010G251000--Sobic004G066200 Sobic010G251000--Sobic004G121100 Sobic010G251000--Sobic001G392300 Sobic001G047400 Sobic001G047400 Sobic010G251000--Sobic001G047400 Sobic010G251000--Sobic004G353200 Sobic008G046500 Sobic008G046500 Sobic010G251000--Sobic008G046500
Octagon: transcription factors


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