Gene annotation
Transcriptome id Sobic.001G386300.1
Synonym Sb01g036630
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X1Q5
Pfam -
Panther DB PTHR31150 PTHR31150:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14180 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g20980.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052469 , Zm00025a002279
Brachypodium KQK01920
Barley HORVU6Hr1G075350.1 , HORVU6Hr1G075350.2
Wheat TraesCS6A02G305100 , TraesCS6A02G305100 , TraesCS6D02G284300
Populus -


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cDNA sequences
Sobic.001G386300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1
2 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
3 Sobic.004G210800 iron-stress related protein, putative, expressed -
4 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
5 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
6 Sobic.001G332500 WRKY81, expressed -
7 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
8 Sobic.010G029900 leucine carboxyl methyltransferase 1, putative, expressed K15451: PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
9 Sobic.002G126500 RNA recognition motif containing protein, expressed -
10 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
11 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
12 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
13 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
14 Sobic.004G226800 expressed protein -
15 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
16 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
17 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
18 Sobic.010G184100 mitochondrial carrier protein, putative, expressed -
19 Sobic.008G047300 Trihelix Family(PubMedID : 24864043)@homeodomain, putative, expressed -
20 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic001G386300 Sobic001G386300 Sobic002G054300 Sobic002G054300 Sobic001G386300--Sobic002G054300 Sobic003G121300 Sobic003G121300 Sobic001G386300--Sobic003G121300 Sobic004G210800 Sobic004G210800 Sobic001G386300--Sobic004G210800 Sobic001G080700 Sobic001G080700 Sobic001G386300--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G386300--Sobic001G031100 Sobic001G332500 Sobic001G332500 Sobic001G386300--Sobic001G332500 Sobic003G316700 Sobic003G316700 Sobic001G386300--Sobic003G316700 Sobic010G029900 Sobic010G029900 Sobic001G386300--Sobic010G029900 Sobic002G126500 Sobic002G126500 Sobic001G386300--Sobic002G126500 Sobic002G054300--Sobic001G080700 Sobic002G054300--Sobic001G386300 Sobic001G375700 Sobic001G375700 Sobic002G054300--Sobic001G375700 Sobic002G054300--Sobic001G332500 Sobic001G392300 Sobic001G392300 Sobic002G054300--Sobic001G392300 Sobic009G205200 Sobic009G205200 Sobic002G054300--Sobic009G205200 Sobic002G161800 Sobic002G161800 Sobic002G054300--Sobic002G161800 Sobic008G179700 Sobic008G179700 Sobic002G054300--Sobic008G179700 Sobic010G251000 Sobic010G251000 Sobic002G054300--Sobic010G251000 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic004G210800--Sobic001G386300 Sobic004G210800--Sobic004G156800 Sobic006G252100 Sobic006G252100 Sobic004G210800--Sobic006G252100 Sobic010G219400 Sobic010G219400 Sobic004G210800--Sobic010G219400 Sobic008G047300 Sobic008G047300 Sobic004G210800--Sobic008G047300 Sobic004G210800--Sobic001G031100 Sobic001G002600 Sobic001G002600 Sobic004G210800--Sobic001G002600 Sobic010G057900 Sobic010G057900 Sobic004G210800--Sobic010G057900 Sobic007G053500 Sobic007G053500 Sobic004G210800--Sobic007G053500 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic009G192000 Sobic009G192000 Sobic001G031100--Sobic009G192000 Sobic001G031100--Sobic003G264200 Sobic001G031100--Sobic001G007000 Sobic004G054100 Sobic004G054100 Sobic001G031100--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic001G031100--Sobic002G047700 Sobic001G031100--Sobic009G222500 Sobic001G031100--Sobic001G080700 Sobic009G068500 Sobic009G068500 Sobic001G031100--Sobic009G068500 Sobic001G031100--Sobic010G251000 Sobic001G332500--Sobic001G080700 Sobic001G122832 Sobic001G122832 Sobic001G332500--Sobic001G122832 Sobic003G253600 Sobic003G253600 Sobic001G332500--Sobic003G253600 Sobic001G332500--Sobic001G375700 Sobic001G332500--Sobic001G392300 Sobic003G221900 Sobic003G221900 Sobic001G332500--Sobic003G221900 Sobic007G136800 Sobic007G136800 Sobic001G332500--Sobic007G136800 Sobic003G398700 Sobic003G398700 Sobic001G332500--Sobic003G398700 Sobic006G185100 Sobic006G185100 Sobic001G332500--Sobic006G185100 Sobic003G316700--Sobic001G386300 Sobic001G425800 Sobic001G425800 Sobic003G316700--Sobic001G425800 Sobic003G316700--Sobic001G031100 Sobic002G358400 Sobic002G358400 Sobic003G316700--Sobic002G358400 Sobic003G316700--Sobic001G332500 Sobic002G257200 Sobic002G257200 Sobic003G316700--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic003G316700--Sobic004G146800 Sobic004G203400 Sobic004G203400 Sobic003G316700--Sobic004G203400 Sobic009G200800 Sobic009G200800 Sobic003G316700--Sobic009G200800 Sobic010G029900--Sobic003G121300 Sobic007G191700 Sobic007G191700 Sobic010G029900--Sobic007G191700 Sobic010G029900--Sobic010G237900 Sobic007G041300 Sobic007G041300 Sobic010G029900--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic010G029900--Sobic010G095700 Sobic005G015450 Sobic005G015450 Sobic010G029900--Sobic005G015450 Sobic006G121300 Sobic006G121300 Sobic010G029900--Sobic006G121300 Sobic007G075900 Sobic007G075900 Sobic010G029900--Sobic007G075900 Sobic007G102700 Sobic007G102700 Sobic010G029900--Sobic007G102700 Sobic010G236400 Sobic010G236400 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic003G241200 Sobic003G241200 Sobic002G126500--Sobic003G241200 Sobic004G084300 Sobic004G084300 Sobic002G126500--Sobic004G084300 Sobic002G126500--Sobic001G375700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800
Octagon: transcription factors


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