Gene annotation
Transcriptome id Sobic.008G047300.1
Synonym Sb08g003990, SbTri09
Functional annotation Trihelix Family (PubMedID : 24864043)
homeodomain, putative, expressed
UniProt C5YSA2
Pfam PF13837
Panther DB PTHR21654 PTHR21654:SF6
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21200 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os12g06640.1 : homeodomain, putative, expressed
MaizeGDB (Corn) Zm00025a053999
Brachypodium PNT64128 , KQJ92127 , PNT64129 , PNT68793 , KQJ89303
Barley HORVU4Hr1G020130.1 , HORVU4Hr1G020130.2 , HORVU4Hr1G020130.3
Wheat -
Populus -


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cDNA sequences
Sobic.008G047300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G118700 MYB family transcription factor, putative, expressed -
2 Sobic.004G155600 dnaJ domain containing protein, expressed -
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.004G158400 AML1, putative, expressed -
5 Sobic.004G355800 expressed protein -
6 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
7 Sobic.010G026600 B3 DNA binding domain containing protein, expressed -
8 Sobic.008G002500 RCD1, putative, expressed -
9 Sobic.001G002600 expressed protein -
10 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
11 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.002G425500 ATPOT1, putative, expressed -
13 Sobic.003G176000 lipase family protein, putative, expressed -
14 Sobic.008G113100 protein binding protein, putative, expressed -
15 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
16 Sobic.010G219400 endonuclease V, putative, expressed -
17 Sobic.007G054400 FAR1 family protein, expressed -
18 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T
19 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
20 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2


Gene co-expression network
sample Sobic008G047300 Sobic008G047300 Sobic006G118700 Sobic006G118700 Sobic008G047300--Sobic006G118700 Sobic004G155600 Sobic004G155600 Sobic008G047300--Sobic004G155600 Sobic003G360400 Sobic003G360400 Sobic008G047300--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic008G047300--Sobic004G158400 Sobic004G355800 Sobic004G355800 Sobic008G047300--Sobic004G355800 Sobic007G159900 Sobic007G159900 Sobic008G047300--Sobic007G159900 Sobic010G026600 Sobic010G026600 Sobic008G047300--Sobic010G026600 Sobic008G002500 Sobic008G002500 Sobic008G047300--Sobic008G002500 Sobic001G002600 Sobic001G002600 Sobic008G047300--Sobic001G002600 Sobic007G183900 Sobic007G183900 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic010G236400 Sobic010G236400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic004G155600--Sobic001G002600 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic004G158400--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic004G158400--Sobic005G167700 Sobic001G261492 Sobic001G261492 Sobic004G158400--Sobic001G261492 Sobic004G158400--Sobic003G360400 Sobic007G105100 Sobic007G105100 Sobic004G158400--Sobic007G105100 Sobic004G158400--Sobic010G112100 Sobic004G158400--Sobic001G433800 Sobic004G158400--Sobic005G112300 Sobic003G188400 Sobic003G188400 Sobic004G158400--Sobic003G188400 Sobic005G200900 Sobic005G200900 Sobic004G355800--Sobic005G200900 Sobic004G355800--Sobic006G118700 Sobic004G355800--Sobic006G210000 Sobic004G355800--Sobic002G154000 Sobic004G355800--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic004G355800--Sobic005G191900 Sobic006G067600 Sobic006G067600 Sobic004G355800--Sobic006G067600 Sobic004G156500 Sobic004G156500 Sobic004G355800--Sobic004G156500 Sobic004G355800--Sobic008G002500 Sobic007G159900--Sobic003G360400 Sobic007G159900--Sobic004G158400 Sobic007G159900--Sobic002G366400 Sobic007G159900--Sobic010G112100 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic010G026600--Sobic008G047300 Sobic010G026600--Sobic006G080400 Sobic010G026600--Sobic005G200900 Sobic002G048700 Sobic002G048700 Sobic010G026600--Sobic002G048700 Sobic010G026600--Sobic008G002500 Sobic010G026600--Sobic004G355800 Sobic010G038100 Sobic010G038100 Sobic010G026600--Sobic010G038100 Sobic010G026600--Sobic004G155600 Sobic009G088000 Sobic009G088000 Sobic010G026600--Sobic009G088000 Sobic006G040800 Sobic006G040800 Sobic008G002500--Sobic006G040800 Sobic001G063700 Sobic001G063700 Sobic008G002500--Sobic001G063700 Sobic008G002500--Sobic001G354600 Sobic008G002500--Sobic003G360400 Sobic008G002500--Sobic009G088000 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic008G002500--Sobic001G433800 Sobic004G332400 Sobic004G332400 Sobic008G002500--Sobic004G332400 Sobic010G237900 Sobic010G237900 Sobic001G002600--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic001G002600--Sobic004G129300 Sobic010G145800 Sobic010G145800 Sobic001G002600--Sobic010G145800 Sobic001G002600--Sobic004G155600 Sobic001G002600--Sobic006G118700 Sobic007G191700 Sobic007G191700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900
Octagon: transcription factors


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