Gene annotation
Transcriptome id Sobic.010G219400.7,Sobic.010G219400.6,Sobic.010G219400.3,Sobic.010G219400.8,Sobic.010G219400.9,Sobic.010G219400.5,Sobic.010G219400.10
Synonym Sb10g026510
Functional annotation endonuclease V, putative, expressed
UniProt A0A1W0VU94 , A0A194YKR7 , C5Z7C3 , A0A194YKN9
Pfam PF04493
Panther DB PTHR28511 PTHR28511:SF1
NCBI CDD KOG4417; Predicted endonuclease
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair GO:0004519endonuclease activity


Orthologs (automatic annotation)
TAIR AT4G31150 : endonuclease V family protein
RAP-DB (Rice) LOC_Os06g45330.1 : endonuclease V, putative, expressed
MaizeGDB (Corn) Zm00025a041980 , Zm00025a041971
Brachypodium KQK16986 , KQK16985 , KQK16984
Barley HORVU7Hr1G109560.10 , HORVU7Hr1G109560.11 , HORVU7Hr1G109560.12 , HORVU7Hr1G109560.19 , HORVU7Hr1G109560.21 , HORVU7Hr1G109560.23 , HORVU7Hr1G109560.22 , HORVU7Hr1G109560.8 , HORVU7Hr1G109560.9 , HORVU7Hr1G109560.6 , HORVU7Hr1G109560.7 , HORVU7Hr1G109560.5 , HORVU7Hr1G109560.2 , HORVU7Hr1G109560.3 , HORVU7Hr1G109560.1
Wheat TraesCS7B02G390100 , TraesCS7B02G390100 , TraesCS7A02G486800 , TraesCS7D02G473300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G200600 expressed protein -
2 Sobic.003G266001 - -
3 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
4 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
5 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
6 Sobic.007G078600 YT521-B, putative, expressed -
7 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
8 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
9 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
10 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
11 Sobic.008G047300 Trihelix Family(PubMedID : 24864043)@homeodomain, putative, expressed -
12 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
13 Sobic.008G131000 domain of unknown function family protein, expressed -
14 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
15 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
16 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
17 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
18 Sobic.003G084700 - -
19 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
20 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G219400 Sobic010G219400 Sobic006G200600 Sobic006G200600 Sobic010G219400--Sobic006G200600 Sobic003G266001 Sobic003G266001 Sobic010G219400--Sobic003G266001 Sobic010G118000 Sobic010G118000 Sobic010G219400--Sobic010G118000 Sobic008G179700 Sobic008G179700 Sobic010G219400--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic010G219400--Sobic003G401100 Sobic007G078600 Sobic007G078600 Sobic010G219400--Sobic007G078600 Sobic007G075900 Sobic007G075900 Sobic010G219400--Sobic007G075900 Sobic008G089100 Sobic008G089100 Sobic010G219400--Sobic008G089100 Sobic001G281600 Sobic001G281600 Sobic010G219400--Sobic001G281600 Sobic004G353200 Sobic004G353200 Sobic006G200600--Sobic004G353200 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic008G047800 Sobic008G047800 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic001G493200 Sobic001G493200 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic010G069100 Sobic010G069100 Sobic003G266001--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic003G266001--Sobic003G408600 Sobic004G072100 Sobic004G072100 Sobic003G266001--Sobic004G072100 Sobic004G021200 Sobic004G021200 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900 Sobic002G371300 Sobic002G371300 Sobic010G118000--Sobic002G371300 Sobic006G148100 Sobic006G148100 Sobic010G118000--Sobic006G148100 Sobic009G255600 Sobic009G255600 Sobic010G118000--Sobic009G255600 Sobic010G118000--Sobic003G266001 Sobic010G266500 Sobic010G266500 Sobic010G118000--Sobic010G266500 Sobic009G143800 Sobic009G143800 Sobic010G118000--Sobic009G143800 Sobic004G353000 Sobic004G353000 Sobic010G118000--Sobic004G353000 Sobic007G225100 Sobic007G225100 Sobic010G118000--Sobic007G225100 Sobic008G014500 Sobic008G014500 Sobic010G118000--Sobic008G014500 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic008G179700--Sobic003G248200 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic007G078600--Sobic008G047800 Sobic003G394300 Sobic003G394300 Sobic007G078600--Sobic003G394300 Sobic003G084700 Sobic003G084700 Sobic007G078600--Sobic003G084700 Sobic006G118700 Sobic006G118700 Sobic007G078600--Sobic006G118700 Sobic007G078600--Sobic006G200600 Sobic007G078600--Sobic009G179700 Sobic007G078500 Sobic007G078500 Sobic007G078600--Sobic007G078500 Sobic002G134200 Sobic002G134200 Sobic007G078600--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic007G078600--Sobic002G133400 Sobic007G075900--Sobic004G353200 Sobic007G075900--Sobic001G392300 Sobic009G177500 Sobic009G177500 Sobic007G075900--Sobic009G177500 Sobic009G044800 Sobic009G044800 Sobic007G075900--Sobic009G044800 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic002G045600 Sobic002G045600 Sobic008G089100--Sobic002G045600 Sobic001G207000 Sobic001G207000 Sobic008G089100--Sobic001G207000 Sobic008G089100--Sobic001G392300 Sobic008G089100--Sobic003G408600 Sobic003G313500 Sobic003G313500 Sobic008G089100--Sobic003G313500 Sobic001G194200 Sobic001G194200 Sobic008G089100--Sobic001G194200 Sobic001G390800 Sobic001G390800 Sobic008G089100--Sobic001G390800 Sobic004G135400 Sobic004G135400 Sobic008G089100--Sobic004G135400 Sobic003G164200 Sobic003G164200 Sobic008G089100--Sobic003G164200 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic001G281600--Sobic007G078500 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic001G281600--Sobic008G179700
Octagon: transcription factors


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