Gene annotation
Transcriptome id Sobic.004G156800.2,Sobic.004G156800.1
Synonym Sb04g020780
Functional annotation RNA pseudouridine synthase, putative, expressed
UniProt A0A194YPX3 , A0A097PJZ1 , A0A194YPX9
Pfam PF00849
Panther DB PTHR11079 PTHR11079:SF85
NCBI CDD KOG1919; RNA pseudouridylate synthases
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT5G51140 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os02g30840.1 : RNA pseudouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a020441
Brachypodium KQJ99604
Barley -
Wheat TraesCS5D02G448100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G102700 - -
2 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
3 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
4 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
5 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
6 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
7 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
8 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
9 Sobic.006G204800 APO, putative, expressed -
10 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
11 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
12 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
13 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
14 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
15 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
16 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
17 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
18 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
19 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
20 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase


Gene co-expression network
sample Sobic004G156800 Sobic004G156800 Sobic007G102700 Sobic007G102700 Sobic004G156800--Sobic007G102700 Sobic010G237900 Sobic010G237900 Sobic004G156800--Sobic010G237900 Sobic001G259000 Sobic001G259000 Sobic004G156800--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic004G156800--Sobic001G527300 Sobic004G129300 Sobic004G129300 Sobic004G156800--Sobic004G129300 Sobic001G114500 Sobic001G114500 Sobic004G156800--Sobic001G114500 Sobic009G164000 Sobic009G164000 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic007G041300 Sobic007G041300 Sobic007G102700--Sobic007G041300 Sobic007G102700--Sobic004G156800 Sobic007G102700--Sobic010G237900 Sobic007G102700--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic007G102700--Sobic007G191700 Sobic001G244300 Sobic001G244300 Sobic007G102700--Sobic001G244300 Sobic001G473600 Sobic001G473600 Sobic007G102700--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic007G102700--Sobic010G186600 Sobic007G102700--Sobic001G114500 Sobic010G237900--Sobic004G129300 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic001G527300--Sobic004G156800 Sobic008G147200 Sobic008G147200 Sobic001G527300--Sobic008G147200 Sobic001G527300--Sobic009G143800 Sobic001G291800 Sobic001G291800 Sobic001G527300--Sobic001G291800 Sobic010G247400 Sobic010G247400 Sobic001G527300--Sobic010G247400 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G168900 Sobic001G168900 Sobic001G527300--Sobic001G168900 Sobic001G527300--Sobic004G340400 Sobic004G129300--Sobic010G237900 Sobic004G129300--Sobic007G191700 Sobic004G129300--Sobic001G002600 Sobic007G091600 Sobic007G091600 Sobic004G129300--Sobic007G091600 Sobic007G090430 Sobic007G090430 Sobic004G129300--Sobic007G090430 Sobic008G173100 Sobic008G173100 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic007G183300 Sobic007G183300 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G114500--Sobic001G473600 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic001G114500--Sobic004G156800 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic009G164000--Sobic001G114500 Sobic009G164000--Sobic003G132000 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic010G236400 Sobic010G236400 Sobic006G204800--Sobic010G236400 Sobic006G200700 Sobic006G200700 Sobic006G204800--Sobic006G200700 Sobic006G195700 Sobic006G195700 Sobic006G204800--Sobic006G195700 Sobic001G392300 Sobic001G392300 Sobic006G204800--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic006G204800--Sobic007G075900 Sobic008G112800 Sobic008G112800 Sobic006G204800--Sobic008G112800 Sobic001G522600 Sobic001G522600 Sobic006G204800--Sobic001G522600 Sobic006G204800--Sobic004G353000 Sobic004G084300 Sobic004G084300 Sobic006G204800--Sobic004G084300
Octagon: transcription factors


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