Gene annotation
Transcriptome id Sobic.001G244300.1
Synonym Sb01g021650
Functional annotation GA19388-PA, putative, expressed
UniProt C5X1H5
Pfam PF13532
Panther DB PTHR13069 PTHR13069:SF11
NCBI CDD KOG3200; Uncharacterized conserved protein
KEGG Orthology K10768; alkylated DNA repair protein alkB homolog 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20350 : oxidoreductases
RAP-DB (Rice) LOC_Os10g28410.1 : GA19388-PA, putative, expressed
MaizeGDB (Corn) Zm00025a006892
Brachypodium KQJ96761 , KQJ96762
Barley HORVU3Hr1G017610.4 , HORVU3Hr1G017610.5 , HORVU3Hr1G017610.6 , HORVU3Hr1G017610.7 , HORVU3Hr1G017610.2 , HORVU3Hr1G017610.3
Wheat TraesCS3D02G098200 , TraesCS3A02G097700 , TraesCS3B02G113400 , TraesCS3B02G113400
Populus -


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cDNA sequences
Sobic.001G244300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G120500 toc64, putative, expressed -
2 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
3 Sobic.001G407700 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
4 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
5 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
6 Sobic.007G102700 - -
7 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
9 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
10 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
11 Sobic.009G046100 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
12 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
13 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
14 Sobic.001G373900 MYB family transcription factor, putative, expressed -
15 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
16 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
17 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
18 Sobic.008G070800 expressed protein -
19 Sobic.006G096900 expressed protein -
20 Sobic.009G016400 RNA recognition motif containing protein, expressed -


Gene co-expression network
sample Sobic001G244300 Sobic001G244300 Sobic001G120500 Sobic001G120500 Sobic001G244300--Sobic001G120500 Sobic008G063300 Sobic008G063300 Sobic001G244300--Sobic008G063300 Sobic001G407700 Sobic001G407700 Sobic001G244300--Sobic001G407700 Sobic005G172500 Sobic005G172500 Sobic001G244300--Sobic005G172500 Sobic009G056200 Sobic009G056200 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G058200 Sobic001G058200 Sobic001G244300--Sobic001G058200 Sobic004G156800 Sobic004G156800 Sobic001G244300--Sobic004G156800 Sobic001G401500 Sobic001G401500 Sobic001G244300--Sobic001G401500 Sobic010G265300 Sobic010G265300 Sobic001G120500--Sobic010G265300 Sobic001G120500--Sobic005G172500 Sobic001G120500--Sobic001G244300 Sobic001G493200 Sobic001G493200 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic008G051200 Sobic008G051200 Sobic001G120500--Sobic008G051200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic001G433800 Sobic001G433800 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic001G407700--Sobic007G207200 Sobic001G407700--Sobic001G244300 Sobic001G407700--Sobic009G056200 Sobic001G407700--Sobic008G063300 Sobic006G086600 Sobic006G086600 Sobic001G407700--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic001G407700--Sobic004G340400 Sobic004G131300 Sobic004G131300 Sobic001G407700--Sobic004G131300 Sobic004G320500 Sobic004G320500 Sobic001G407700--Sobic004G320500 Sobic001G407700--Sobic005G172500 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic005G172500--Sobic009G056200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic009G056200--Sobic007G207200 Sobic009G056200--Sobic008G063300 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic007G041300 Sobic007G041300 Sobic007G102700--Sobic007G041300 Sobic007G102700--Sobic004G156800 Sobic010G237900 Sobic010G237900 Sobic007G102700--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic007G102700--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic007G102700--Sobic007G191700 Sobic007G102700--Sobic001G244300 Sobic001G473600 Sobic001G473600 Sobic007G102700--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic007G102700--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic007G102700--Sobic001G114500 Sobic001G151100 Sobic001G151100 Sobic001G058200--Sobic001G151100 Sobic005G162500 Sobic005G162500 Sobic001G058200--Sobic005G162500 Sobic001G542400 Sobic001G542400 Sobic001G058200--Sobic001G542400 Sobic002G133300 Sobic002G133300 Sobic001G058200--Sobic002G133300 Sobic008G082500 Sobic008G082500 Sobic001G058200--Sobic008G082500 Sobic001G058200--Sobic004G131300 Sobic004G248600 Sobic004G248600 Sobic001G058200--Sobic004G248600 Sobic003G214600 Sobic003G214600 Sobic001G058200--Sobic003G214600 Sobic001G087600 Sobic001G087600 Sobic001G058200--Sobic001G087600 Sobic004G156800--Sobic007G102700 Sobic004G156800--Sobic010G237900 Sobic001G259000 Sobic001G259000 Sobic004G156800--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic004G156800--Sobic001G527300 Sobic004G156800--Sobic004G129300 Sobic004G156800--Sobic001G114500 Sobic009G164000 Sobic009G164000 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic001G401500--Sobic004G340400 Sobic001G401500--Sobic001G259000 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic001G401500--Sobic006G086600
Octagon: transcription factors


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