Gene annotation
Transcriptome id Sobic.001G401500.1,Sobic.001G401500.2
Synonym Sb01g037990
Functional annotation programmed cell death protein 2, putative, expressed
UniProt C5WNE5
Pfam PF01753 PF04194
Panther DB PTHR12298 PTHR12298:SF26
NCBI CDD KOG2061; Uncharacterized MYND Zn-finger protein
KEGG Orthology K14801; pre-rRNA-processing protein TSR4
Gene Ontology GO:0005737; cytoplasm


Orthologs (automatic annotation)
TAIR AT4G02220 : zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein
RAP-DB (Rice) LOC_Os03g18830.1 : programmed cell death protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a033858 , Zm00025a042629 , Zm00025a057999 , Zm00025a020104 , Zm00025a052614 , Zm00025a002070
Brachypodium -
Barley HORVU4Hr1G054890.12 , HORVU4Hr1G054890.13 , HORVU4Hr1G054890.10 , HORVU4Hr1G054890.11 , HORVU4Hr1G054890.16 , HORVU4Hr1G054890.14 , HORVU4Hr1G054890.15 , HORVU4Hr1G054890.8 , HORVU4Hr1G054890.9 , HORVU4Hr1G054890.1 , HORVU4Hr1G054890.2 , HORVU4Hr1G054890.3 , HORVU4Hr1G054890.5 , HORVU4Hr1G054890.6 , HORVU4Hr1G054890.7
Wheat TraesCS4B02G188000 , TraesCS4D02G189400 , TraesCS1B02G115400 , TraesCS4A02G116200 , TraesCS4A02G116200 , TraesCS2D02G317600
Populus -


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cDNA sequences
Sobic.001G401500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
2 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
3 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
4 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
5 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
6 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
7 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
8 Sobic.010G055700 tetratricopeptide repeat domain containing protein, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
9 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
10 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
12 Sobic.009G016400 RNA recognition motif containing protein, expressed -
13 Sobic.001G407700 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
14 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
15 Sobic.008G088875 - -
16 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.007G140400 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
18 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2


Gene co-expression network
sample Sobic001G401500 Sobic001G401500 Sobic004G340400 Sobic004G340400 Sobic001G401500--Sobic004G340400 Sobic001G259000 Sobic001G259000 Sobic001G401500--Sobic001G259000 Sobic010G007100 Sobic010G007100 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G244300 Sobic001G244300 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic006G086600 Sobic006G086600 Sobic001G401500--Sobic006G086600 Sobic001G145400 Sobic001G145400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic001G259000--Sobic009G101200 Sobic001G259000--Sobic001G145400 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic010G007100--Sobic001G145400 Sobic008G147200 Sobic008G147200 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic001G429600 Sobic001G429600 Sobic009G211200--Sobic001G429600 Sobic006G125900 Sobic006G125900 Sobic009G211200--Sobic006G125900 Sobic004G224600 Sobic004G224600 Sobic009G211200--Sobic004G224600 Sobic009G211200--Sobic001G401500 Sobic002G105101 Sobic002G105101 Sobic009G211200--Sobic002G105101 Sobic009G211200--Sobic009G101200 Sobic009G211200--Sobic006G002800 Sobic005G108000 Sobic005G108000 Sobic009G211200--Sobic005G108000 Sobic001G393900 Sobic001G393900 Sobic009G211200--Sobic001G393900 Sobic001G120500 Sobic001G120500 Sobic001G244300--Sobic001G120500 Sobic008G063300 Sobic008G063300 Sobic001G244300--Sobic008G063300 Sobic001G407700 Sobic001G407700 Sobic001G244300--Sobic001G407700 Sobic005G172500 Sobic005G172500 Sobic001G244300--Sobic005G172500 Sobic009G056200 Sobic009G056200 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G058200 Sobic001G058200 Sobic001G244300--Sobic001G058200 Sobic001G244300--Sobic004G156800 Sobic001G244300--Sobic001G401500 Sobic006G193300--Sobic004G340400 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G193300--Sobic006G125900 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic009G101200--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic010G055700--Sobic010G003400 Sobic010G055700--Sobic006G086600 Sobic003G146600 Sobic003G146600 Sobic010G055700--Sobic003G146600 Sobic010G059500 Sobic010G059500 Sobic010G055700--Sobic010G059500 Sobic010G055700--Sobic002G235200 Sobic010G055700--Sobic001G401500 Sobic010G055700--Sobic008G160000 Sobic008G051200 Sobic008G051200 Sobic010G055700--Sobic008G051200 Sobic010G055700--Sobic001G145400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100
Octagon: transcription factors


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