Gene annotation
Transcriptome id Sobic.007G140400.1
Synonym Sb07g021600
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5YLK3
Pfam PF04857
Panther DB PTHR15092 PTHR15092:SF28
NCBI CDD KOG1990; Poly(A)-specific exoribonuclease PARN
KEGG Orthology K01148; PARN, poly(A)-specific ribonuclease
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G25430 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os08g34160.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031174
Brachypodium PNT68193 , KQJ98438
Barley HORVU5Hr1G012870.9 , HORVU5Hr1G012870.8 , HORVU5Hr1G012870.1 , HORVU5Hr1G012870.3 , HORVU5Hr1G012870.2 , HORVU5Hr1G012870.5 , HORVU5Hr1G012870.4 , HORVU5Hr1G012870.7 , HORVU5Hr1G012870.6 , HORVU5Hr1G012870.34 , HORVU5Hr1G012870.19 , HORVU5Hr1G012870.18 , HORVU5Hr1G012870.33 , HORVU5Hr1G012870.14 , HORVU5Hr1G012870.31 , HORVU5Hr1G012870.16 , HORVU5Hr1G012870.11 , HORVU5Hr1G012870.10 , HORVU5Hr1G012870.13 , HORVU5Hr1G012870.12 , HORVU5Hr1G012870.15 , HORVU5Hr1G012870.32 , HORVU5Hr1G012870.17 , HORVU5Hr1G012870.30 , HORVU5Hr1G012870.28 , HORVU5Hr1G012870.29 , HORVU5Hr1G012870.35 , HORVU5Hr1G012870.20 , HORVU5Hr1G012870.21 , HORVU5Hr1G012870.22 , HORVU5Hr1G012870.23 , HORVU5Hr1G012870.24 , HORVU5Hr1G012870.25 , HORVU5Hr1G012870.26 , HORVU5Hr1G012870.27
Wheat TraesCS5B02G062700 , TraesCS5D02G064900 , TraesCS5D02G064900 , TraesCS5D02G064900 , TraesCS5A02G053500 , TraesCS5A02G053500
Populus -


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cDNA sequences
Sobic.007G140400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
2 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
3 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
4 Sobic.001G407700 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
5 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
6 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
7 Sobic.004G017400 expressed protein -
8 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
9 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
10 Sobic.010G055700 tetratricopeptide repeat domain containing protein, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
11 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
12 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
13 Sobic.010G262000 tRNA-dihydrouridine synthase, putative, expressed K05542: tRNA-dihydrouridine synthase 1
14 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
15 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
16 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
17 Sobic.003G171500 dnaJ domain containing protein, expressed -
18 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
19 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.004G332400 neurochondrin family protein, putative, expressed -


Gene co-expression network
sample Sobic007G140400 Sobic007G140400 Sobic006G010400 Sobic006G010400 Sobic007G140400--Sobic006G010400 Sobic008G051200 Sobic008G051200 Sobic007G140400--Sobic008G051200 Sobic001G401500 Sobic001G401500 Sobic007G140400--Sobic001G401500 Sobic001G407700 Sobic001G407700 Sobic007G140400--Sobic001G407700 Sobic003G146600 Sobic003G146600 Sobic007G140400--Sobic003G146600 Sobic002G359400 Sobic002G359400 Sobic007G140400--Sobic002G359400 Sobic004G017400 Sobic004G017400 Sobic007G140400--Sobic004G017400 Sobic006G086600 Sobic006G086600 Sobic007G140400--Sobic006G086600 Sobic001G244300 Sobic001G244300 Sobic007G140400--Sobic001G244300 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G084000 Sobic006G084000 Sobic006G010400--Sobic006G084000 Sobic007G071900 Sobic007G071900 Sobic006G010400--Sobic007G071900 Sobic001G537500 Sobic001G537500 Sobic006G010400--Sobic001G537500 Sobic009G249800 Sobic009G249800 Sobic006G010400--Sobic009G249800 Sobic006G010400--Sobic007G140400 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic004G030800 Sobic004G030800 Sobic008G051200--Sobic004G030800 Sobic004G340400 Sobic004G340400 Sobic001G401500--Sobic004G340400 Sobic001G259000 Sobic001G259000 Sobic001G401500--Sobic001G259000 Sobic010G007100 Sobic010G007100 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic001G401500--Sobic006G086600 Sobic007G207200 Sobic007G207200 Sobic001G407700--Sobic007G207200 Sobic001G407700--Sobic001G244300 Sobic009G056200 Sobic009G056200 Sobic001G407700--Sobic009G056200 Sobic008G063300 Sobic008G063300 Sobic001G407700--Sobic008G063300 Sobic001G407700--Sobic006G086600 Sobic001G407700--Sobic004G340400 Sobic004G131300 Sobic004G131300 Sobic001G407700--Sobic004G131300 Sobic004G320500 Sobic004G320500 Sobic001G407700--Sobic004G320500 Sobic005G172500 Sobic005G172500 Sobic001G407700--Sobic005G172500 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic001G145400 Sobic001G145400 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic001G007000 Sobic001G007000 Sobic002G359400--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic008G004600 Sobic008G004600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic004G017400--Sobic001G251600 Sobic004G156800 Sobic004G156800 Sobic004G017400--Sobic004G156800 Sobic002G408900 Sobic002G408900 Sobic004G017400--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic004G017400--Sobic004G208500 Sobic010G223300 Sobic010G223300 Sobic004G017400--Sobic010G223300 Sobic008G055900 Sobic008G055900 Sobic004G017400--Sobic008G055900 Sobic004G017400--Sobic003G146600 Sobic001G434200 Sobic001G434200 Sobic004G017400--Sobic001G434200 Sobic002G171300 Sobic002G171300 Sobic004G017400--Sobic002G171300 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100 Sobic001G120500 Sobic001G120500 Sobic001G244300--Sobic001G120500 Sobic001G244300--Sobic008G063300 Sobic001G244300--Sobic001G407700 Sobic001G244300--Sobic005G172500 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G058200 Sobic001G058200 Sobic001G244300--Sobic001G058200 Sobic001G244300--Sobic004G156800 Sobic001G244300--Sobic001G401500
Octagon: transcription factors


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