Gene annotation
Transcriptome id Sobic.001G407700.1,Sobic.001G407700.2
Synonym Sb01g038510
Functional annotation leucyl-tRNA synthetase, cytoplasmic, putative, expressed
UniProt C5WNJ7
Pfam PF01406 PF08264 PF00133
Panther DB PTHR11946 PTHR11946:SF51
NCBI CDD -
KEGG Orthology K01869; LARS, leucyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT1G09620 : ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
RAP-DB (Rice) LOC_Os09g21110.1 : leucyl-tRNA synthetase, cytoplasmic, putative, expressed
MaizeGDB (Corn) Zm00025a009401 , Zm00025a013695
Brachypodium KQK03525 , KQJ97799
Barley HORVU3Hr1G032730.3 , HORVU2Hr1G026750.4 , HORVU2Hr1G026750.5 , HORVU2Hr1G026750.6 , HORVU2Hr1G026750.7 , HORVU2Hr1G026750.8 , HORVU2Hr1G026750.9 , HORVU2Hr1G026750.10 , HORVU3Hr1G032730.2 , HORVU3Hr1G032730.1 , HORVU3Hr1G032730.4 , HORVU3Hr1G032730.5
Wheat TraesCS3B02G194400
Populus -


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cDNA sequences
Sobic.001G407700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
2 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
3 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
4 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
5 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
6 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
7 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
8 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
9 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
10 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
11 Sobic.009G046100 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
12 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
13 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
14 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
15 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
16 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
18 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
19 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
20 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase


Gene co-expression network
sample Sobic001G407700 Sobic001G407700 Sobic007G207200 Sobic007G207200 Sobic001G407700--Sobic007G207200 Sobic001G244300 Sobic001G244300 Sobic001G407700--Sobic001G244300 Sobic009G056200 Sobic009G056200 Sobic001G407700--Sobic009G056200 Sobic008G063300 Sobic008G063300 Sobic001G407700--Sobic008G063300 Sobic006G086600 Sobic006G086600 Sobic001G407700--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic001G407700--Sobic004G340400 Sobic004G131300 Sobic004G131300 Sobic001G407700--Sobic004G131300 Sobic004G320500 Sobic004G320500 Sobic001G407700--Sobic004G320500 Sobic005G172500 Sobic005G172500 Sobic001G407700--Sobic005G172500 Sobic001G166600 Sobic001G166600 Sobic007G207200--Sobic001G166600 Sobic001G219600 Sobic001G219600 Sobic007G207200--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic007G207200--Sobic002G317200 Sobic010G166400 Sobic010G166400 Sobic007G207200--Sobic010G166400 Sobic007G207200--Sobic001G407700 Sobic009G084900 Sobic009G084900 Sobic007G207200--Sobic009G084900 Sobic007G207200--Sobic009G056200 Sobic009G047200 Sobic009G047200 Sobic007G207200--Sobic009G047200 Sobic010G116600 Sobic010G116600 Sobic007G207200--Sobic010G116600 Sobic001G120500 Sobic001G120500 Sobic001G244300--Sobic001G120500 Sobic001G244300--Sobic008G063300 Sobic001G244300--Sobic001G407700 Sobic001G244300--Sobic005G172500 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G058200 Sobic001G058200 Sobic001G244300--Sobic001G058200 Sobic004G156800 Sobic004G156800 Sobic001G244300--Sobic004G156800 Sobic001G401500 Sobic001G401500 Sobic001G244300--Sobic001G401500 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic009G056200--Sobic007G207200 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic001G433800 Sobic001G433800 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic004G340400--Sobic001G401500 Sobic002G133300 Sobic002G133300 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic004G131300--Sobic005G172500 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic005G172500--Sobic009G056200 Sobic001G493200 Sobic001G493200 Sobic005G172500--Sobic001G493200 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic004G257100 Sobic004G257100 Sobic005G172500--Sobic004G257100
Octagon: transcription factors


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