Gene annotation
Transcriptome id Sobic.009G046100.1
Synonym Sb09g003950
Functional annotation phenylalanyl-tRNA synthetase beta chain, putative, expressed
UniProt C5Z055
Pfam PF01409 PF03484 PF03483
Panther DB PTHR10947
NCBI CDD -
KEGG Orthology K01890; FARSB, phenylalanyl-tRNA synthetase beta chain
Gene Ontology GO:0005737; cytoplasm GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000049tRNA binding GO:0006432phenylalanyl-tRNA aminoacylation GO:0003723RNA binding GO:0000287magnesium ion binding GO:0004826phenylalanine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT1G72550 : tRNA synthetase beta subunit family protein
RAP-DB (Rice) LOC_Os05g48510.1 : phenylalanyl-tRNA synthetase beta chain, putative, expressed
MaizeGDB (Corn) Zm00025a041055
Brachypodium KQJ86559
Barley HORVU5Hr1G027730.2 , HORVU5Hr1G027730.3 , HORVU5Hr1G027730.1 , HORVU5Hr1G027730.6 , HORVU5Hr1G027730.7 , HORVU5Hr1G027730.4 , HORVU5Hr1G027730.5 , HORVU5Hr1G027730.8 , HORVU5Hr1G027730.9 , HORVU1Hr1G050920.20 , HORVU1Hr1G050920.21 , HORVU1Hr1G050920.22 , HORVU1Hr1G050920.9 , HORVU5Hr1G027730.11 , HORVU5Hr1G027730.12 , HORVU1Hr1G050920.1 , HORVU1Hr1G050920.3 , HORVU1Hr1G050920.2 , HORVU1Hr1G050920.5 , HORVU1Hr1G050920.4 , HORVU1Hr1G050920.7 , HORVU1Hr1G050920.6 , HORVU5Hr1G027730.10 , HORVU1Hr1G050920.8 , HORVU1Hr1G050920.19 , HORVU1Hr1G050920.18 , HORVU1Hr1G050920.15 , HORVU1Hr1G050920.14 , HORVU1Hr1G050920.17 , HORVU1Hr1G050920.16 , HORVU1Hr1G050920.11 , HORVU1Hr1G050920.10 , HORVU1Hr1G050920.13 , HORVU1Hr1G050920.12
Wheat TraesCS5D02G113200 , TraesCS5D02G113200 , TraesCS5B02G105800 , TraesCS1D02G198800 , TraesCS1A02G195300 , TraesCS5A02G100700 , TraesCS1B02G210000
Populus -


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cDNA sequences
Sobic.009G046100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
2 Sobic.001G407700 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
3 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
4 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
5 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
6 Sobic.009G016400 RNA recognition motif containing protein, expressed -
7 Sobic.008G070800 expressed protein -
8 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
9 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
10 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
11 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
12 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
13 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
14 Sobic.002G263600 expressed protein -
15 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
16 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
17 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
18 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
19 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
20 Sobic.006G103200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -


Gene co-expression network
sample Sobic009G046100 Sobic009G046100 Sobic001G455800 Sobic001G455800 Sobic009G046100--Sobic001G455800 Sobic001G407700 Sobic001G407700 Sobic009G046100--Sobic001G407700 Sobic010G206300 Sobic010G206300 Sobic009G046100--Sobic010G206300 Sobic008G082500 Sobic008G082500 Sobic009G046100--Sobic008G082500 Sobic001G244300 Sobic001G244300 Sobic009G046100--Sobic001G244300 Sobic009G016400 Sobic009G016400 Sobic009G046100--Sobic009G016400 Sobic008G070800 Sobic008G070800 Sobic009G046100--Sobic008G070800 Sobic007G054800 Sobic007G054800 Sobic009G046100--Sobic007G054800 Sobic001G058200 Sobic001G058200 Sobic009G046100--Sobic001G058200 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G145400 Sobic001G145400 Sobic001G455800--Sobic001G145400 Sobic007G207200 Sobic007G207200 Sobic001G407700--Sobic007G207200 Sobic001G407700--Sobic001G244300 Sobic009G056200 Sobic009G056200 Sobic001G407700--Sobic009G056200 Sobic008G063300 Sobic008G063300 Sobic001G407700--Sobic008G063300 Sobic006G086600 Sobic006G086600 Sobic001G407700--Sobic006G086600 Sobic001G407700--Sobic004G340400 Sobic004G131300 Sobic004G131300 Sobic001G407700--Sobic004G131300 Sobic004G320500 Sobic004G320500 Sobic001G407700--Sobic004G320500 Sobic005G172500 Sobic005G172500 Sobic001G407700--Sobic005G172500 Sobic010G206300--Sobic008G082500 Sobic010G206300--Sobic001G145400 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic010G206300--Sobic001G455800 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic001G120500 Sobic001G120500 Sobic001G244300--Sobic001G120500 Sobic001G244300--Sobic008G063300 Sobic001G244300--Sobic001G407700 Sobic001G244300--Sobic005G172500 Sobic001G244300--Sobic009G056200 Sobic007G102700 Sobic007G102700 Sobic001G244300--Sobic007G102700 Sobic001G244300--Sobic001G058200 Sobic004G156800 Sobic004G156800 Sobic001G244300--Sobic004G156800 Sobic001G401500 Sobic001G401500 Sobic001G244300--Sobic001G401500 Sobic009G016400--Sobic001G455800 Sobic009G016400--Sobic004G340400 Sobic009G016400--Sobic008G160000 Sobic009G016400--Sobic004G320500 Sobic001G052400 Sobic001G052400 Sobic009G016400--Sobic001G052400 Sobic002G256700 Sobic002G256700 Sobic009G016400--Sobic002G256700 Sobic004G145000 Sobic004G145000 Sobic009G016400--Sobic004G145000 Sobic009G016400--Sobic009G046100 Sobic009G016400--Sobic001G401500 Sobic001G080700 Sobic001G080700 Sobic008G070800--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic008G070800--Sobic001G392300 Sobic006G185100 Sobic006G185100 Sobic008G070800--Sobic006G185100 Sobic005G059800 Sobic005G059800 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic002G047700 Sobic002G047700 Sobic008G070800--Sobic002G047700 Sobic002G294800 Sobic002G294800 Sobic008G070800--Sobic002G294800 Sobic001G333100 Sobic001G333100 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic007G054800--Sobic002G142900 Sobic007G054800--Sobic004G131300 Sobic001G058200--Sobic001G151100 Sobic001G058200--Sobic005G162500 Sobic001G542400 Sobic001G542400 Sobic001G058200--Sobic001G542400 Sobic001G058200--Sobic002G133300 Sobic001G058200--Sobic008G082500 Sobic001G058200--Sobic004G131300 Sobic004G248600 Sobic004G248600 Sobic001G058200--Sobic004G248600 Sobic003G214600 Sobic003G214600 Sobic001G058200--Sobic003G214600 Sobic001G087600 Sobic001G087600 Sobic001G058200--Sobic001G087600
Octagon: transcription factors


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