Gene annotation
Transcriptome id Sobic.006G103200.2,Sobic.006G103200.1
Synonym Sb06g018670
Functional annotation endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
UniProt C5Y9R1
Pfam PF13850 PF07970
Panther DB PTHR10984 PTHR10984:SF35
NCBI CDD KOG2667; COPII vesicle protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G36050 : Endoplasmic reticulum vesicle transporter protein
RAP-DB (Rice) LOC_Os04g38340.1 : endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a020212 , Zm00025a044064 , Zm00025a011145
Brachypodium KQJ82929 , KQJ82928 , KQK05669 , KQK05671 , KQK05670 , KQJ82930 , KQJ82931 , KQJ82932 , KQJ82933 , KQJ82934 , PNT61210 , PNT61211
Barley HORVU4Hr1G052080.1 , HORVU2Hr1G079830.9 , HORVU2Hr1G079830.1 , HORVU2Hr1G079830.3 , HORVU2Hr1G079830.2 , HORVU2Hr1G079830.5 , HORVU2Hr1G079830.4 , HORVU2Hr1G079830.7 , HORVU2Hr1G079830.6
Wheat TraesCS2B02G339700 , TraesCS2B02G339700 , TraesCS2D02G319700 , TraesCS2D02G319700 , TraesCS4B02G177000 , TraesCS2A02G341900 , TraesCS4D02G178700 , TraesCS4D02G178700 , TraesCS4D02G178700 , TraesCS2A02G341900 , TraesCS4A02G127700
Populus -


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cDNA sequences
Sobic.006G103200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
2 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
3 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
4 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
5 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
6 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
7 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
8 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
9 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
10 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
11 Sobic.004G030900 zinc finger, C3HC4 type family protein, expressed -
12 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
13 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
14 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
15 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
16 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
17 Sobic.009G084900 expressed protein -
18 Sobic.008G033500 nucleolar GTPase, putative, expressed -
19 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
20 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -


Gene co-expression network
sample Sobic006G103200 Sobic006G103200 Sobic009G201700 Sobic009G201700 Sobic006G103200--Sobic009G201700 Sobic002G359400 Sobic002G359400 Sobic006G103200--Sobic002G359400 Sobic008G055900 Sobic008G055900 Sobic006G103200--Sobic008G055900 Sobic008G004600 Sobic008G004600 Sobic006G103200--Sobic008G004600 Sobic006G136400 Sobic006G136400 Sobic006G103200--Sobic006G136400 Sobic009G075800 Sobic009G075800 Sobic006G103200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic006G103200--Sobic004G275700 Sobic001G199100 Sobic001G199100 Sobic006G103200--Sobic001G199100 Sobic001G007000 Sobic001G007000 Sobic006G103200--Sobic001G007000 Sobic009G131300 Sobic009G131300 Sobic009G201700--Sobic009G131300 Sobic007G054800 Sobic007G054800 Sobic009G201700--Sobic007G054800 Sobic009G201700--Sobic006G103200 Sobic004G030900 Sobic004G030900 Sobic009G201700--Sobic004G030900 Sobic004G277200 Sobic004G277200 Sobic009G201700--Sobic004G277200 Sobic010G059500 Sobic010G059500 Sobic009G201700--Sobic010G059500 Sobic006G166200 Sobic006G166200 Sobic009G201700--Sobic006G166200 Sobic009G084900 Sobic009G084900 Sobic009G201700--Sobic009G084900 Sobic002G429300 Sobic002G429300 Sobic009G201700--Sobic002G429300 Sobic002G359400--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic008G055900--Sobic006G136400 Sobic001G447300 Sobic001G447300 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic006G126100 Sobic006G126100 Sobic008G004600--Sobic006G126100 Sobic008G004600--Sobic006G136400 Sobic004G135400 Sobic004G135400 Sobic008G004600--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic008G004600--Sobic005G003300 Sobic010G205800 Sobic010G205800 Sobic008G004600--Sobic010G205800 Sobic006G208500 Sobic006G208500 Sobic008G004600--Sobic006G208500 Sobic004G039600 Sobic004G039600 Sobic008G004600--Sobic004G039600 Sobic008G004600--Sobic001G007000 Sobic008G004600--Sobic002G359400 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic009G222500 Sobic009G222500 Sobic009G075800--Sobic009G222500 Sobic009G075800--Sobic004G275700 Sobic009G075800--Sobic010G020400 Sobic009G075800--Sobic001G199100 Sobic009G075800--Sobic008G004600 Sobic003G012200 Sobic003G012200 Sobic009G075800--Sobic003G012200 Sobic009G075800--Sobic006G136400 Sobic009G075800--Sobic001G392300 Sobic007G071900 Sobic007G071900 Sobic009G075800--Sobic007G071900 Sobic004G275700--Sobic001G199100 Sobic001G091300 Sobic001G091300 Sobic004G275700--Sobic001G091300 Sobic004G275700--Sobic009G075800 Sobic004G275700--Sobic002G262900 Sobic004G275700--Sobic001G007000 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100
Octagon: transcription factors


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