Gene annotation
Transcriptome id Sobic.004G030900.1
Synonym Sb04g002690
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt C5XTV5
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF65
NCBI CDD KOG1609; Protein involved in mRNA turnover and stability
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G50440 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os02g03950.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a018866
Brachypodium PNT65809 , KQJ93154 , KQJ93150 , KQJ93151 , KQJ93152 , KQJ93153 , KQJ93149 , KQJ93148 , KQJ93147 , KQJ93143 , KQJ93142 , KQJ93146 , KQJ93145 , KQJ93144 , KQJ93141 , PNT65810 , PNT65811 , PNT65812 , KQJ93140
Barley HORVU6Hr1G017680.7 , HORVU6Hr1G017680.2 , HORVU6Hr1G017680.1 , HORVU6Hr1G017680.8 , HORVU6Hr1G017680.9 , HORVU6Hr1G017680.6 , HORVU6Hr1G017680.4 , HORVU6Hr1G017680.5 , HORVU6Hr1G017680.3 , HORVU6Hr1G017680.14 , HORVU6Hr1G017680.15 , HORVU6Hr1G017680.16 , HORVU6Hr1G017680.10 , HORVU6Hr1G017680.11 , HORVU6Hr1G017680.12 , HORVU6Hr1G017680.13
Wheat TraesCS6B02G124600 , TraesCS6B02G124600 , TraesCS6A02G096200 , TraesCS6A02G096200 , TraesCS6D02G087300 , TraesCS6D02G087300
Populus -


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cDNA sequences
Sobic.004G030900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
2 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
3 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
4 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
5 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
6 Sobic.009G084900 expressed protein -
7 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.006G103200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
9 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
10 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
11 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
12 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
13 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
14 Sobic.004G322400 WD40-like, putative, expressed -
15 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
16 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
17 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
18 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
19 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
20 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase


Gene co-expression network
sample Sobic004G030900 Sobic004G030900 Sobic009G201700 Sobic009G201700 Sobic004G030900--Sobic009G201700 Sobic008G082500 Sobic008G082500 Sobic004G030900--Sobic008G082500 Sobic010G059500 Sobic010G059500 Sobic004G030900--Sobic010G059500 Sobic009G131300 Sobic009G131300 Sobic004G030900--Sobic009G131300 Sobic008G103300 Sobic008G103300 Sobic004G030900--Sobic008G103300 Sobic009G084900 Sobic009G084900 Sobic004G030900--Sobic009G084900 Sobic001G145400 Sobic001G145400 Sobic004G030900--Sobic001G145400 Sobic006G103200 Sobic006G103200 Sobic004G030900--Sobic006G103200 Sobic002G020700 Sobic002G020700 Sobic004G030900--Sobic002G020700 Sobic009G201700--Sobic009G131300 Sobic007G054800 Sobic007G054800 Sobic009G201700--Sobic007G054800 Sobic009G201700--Sobic006G103200 Sobic009G201700--Sobic004G030900 Sobic004G277200 Sobic004G277200 Sobic009G201700--Sobic004G277200 Sobic009G201700--Sobic010G059500 Sobic006G166200 Sobic006G166200 Sobic009G201700--Sobic006G166200 Sobic009G201700--Sobic009G084900 Sobic002G429300 Sobic002G429300 Sobic009G201700--Sobic002G429300 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic008G082500--Sobic002G020700 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic005G162500 Sobic005G162500 Sobic009G131300--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic009G131300--Sobic008G088872 Sobic009G131300--Sobic010G059500 Sobic008G098900 Sobic008G098900 Sobic009G131300--Sobic008G098900 Sobic006G184900 Sobic006G184900 Sobic009G131300--Sobic006G184900 Sobic001G493700 Sobic001G493700 Sobic009G131300--Sobic001G493700 Sobic009G131300--Sobic009G084900 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic006G103200--Sobic009G201700 Sobic002G359400 Sobic002G359400 Sobic006G103200--Sobic002G359400 Sobic006G103200--Sobic008G055900 Sobic008G004600 Sobic008G004600 Sobic006G103200--Sobic008G004600 Sobic006G136400 Sobic006G136400 Sobic006G103200--Sobic006G136400 Sobic009G075800 Sobic009G075800 Sobic006G103200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic006G103200--Sobic004G275700 Sobic001G199100 Sobic001G199100 Sobic006G103200--Sobic001G199100 Sobic001G007000 Sobic001G007000 Sobic006G103200--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic002G020700--Sobic008G082500 Sobic002G020700--Sobic007G054800
Octagon: transcription factors


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