Gene annotation
Transcriptome id Sobic.008G082500.1
Synonym Sb08g008230, ALATS, ACD
Functional annotation alanyl-tRNA synthetase, putative, expressed
UniProt C5YTZ0
Pfam PF02272 PF07973 PF01411
Panther DB PTHR11777 PTHR11777:SF18
NCBI CDD -
KEGG Orthology K01872; AARS, alanyl-tRNA synthetase
Gene Ontology GO:0003676; nucleic acid binding GO:0016876aminoacyl-tRNA ligase activity GO:0005524ATP binding GO:0006419alanyl-tRNA aminoacylation GO:0004813alanine-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G50200 : Alanyl-tRNA synthetase
RAP-DB (Rice) LOC_Os10g10244.1 : alanyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a054207
Brachypodium KQJ96380
Barley HORVU4Hr1G027410.8 , HORVU4Hr1G027410.9 , HORVU4Hr1G027410.6 , HORVU4Hr1G027410.7 , HORVU4Hr1G027410.4 , HORVU4Hr1G027410.5 , HORVU4Hr1G027410.3 , HORVU4Hr1G027410.1 , HORVU4Hr1G009170.1 , HORVU4Hr1G009160.1 , HORVU4Hr1G027410.2 , HORVU4Hr1G027410.10 , HORVU4Hr1G027410.11 , HORVU4Hr1G027410.12 , HORVU4Hr1G027410.13 , HORVU4Hr1G088900.16 , HORVU4Hr1G088900.15 , HORVU4Hr1G088900.14 , HORVU4Hr1G088900.13 , HORVU4Hr1G088900.12 , HORVU4Hr1G088900.10 , HORVU4Hr1G088900.9 , HORVU4Hr1G088900.8 , HORVU4Hr1G088900.7 , HORVU4Hr1G088900.6 , HORVU4Hr1G088900.5 , HORVU4Hr1G088900.4 , HORVU4Hr1G088900.3 , HORVU4Hr1G088900.2 , HORVU4Hr1G088900.1
Wheat TraesCS4A02G177000 , TraesCS4B02G398200 , TraesCS4B02G309000 , TraesCS4B02G398200 , TraesCS4B02G398200 , TraesCS2A02G017200 , TraesCS7A02G239200 , TraesCS7A02G239200 , TraesCS7B02G137600 , TraesCS4D02G135700 , TraesCS4A02G259800 , TraesCS4B02G140900 , TraesCS7B02G137500 , TraesCS4D02G055000 , TraesCS4B02G054900 , TraesCSU02G115400 , TraesCS4B02G308900
Populus -


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cDNA sequences
Sobic.008G082500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G084900 expressed protein -
2 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
3 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
4 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
5 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
6 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
7 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
8 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
9 Sobic.004G023100 protein binding protein, putative, expressed -
10 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
11 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
13 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
14 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
16 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
17 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
18 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
19 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
20 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11


Gene co-expression network
sample Sobic008G082500 Sobic008G082500 Sobic009G084900 Sobic009G084900 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic001G145400 Sobic001G145400 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic003G189600 Sobic003G189600 Sobic010G185400--Sobic003G189600 Sobic010G185400--Sobic006G077200 Sobic010G185400--Sobic009G084900 Sobic010G185400--Sobic008G082500 Sobic001G035200 Sobic001G035200 Sobic010G185400--Sobic001G035200 Sobic009G126600 Sobic009G126600 Sobic010G185400--Sobic009G126600 Sobic007G042400 Sobic007G042400 Sobic010G185400--Sobic007G042400 Sobic003G416700 Sobic003G416700 Sobic010G185400--Sobic003G416700 Sobic004G072100 Sobic004G072100 Sobic010G185400--Sobic004G072100 Sobic010G206300--Sobic008G082500 Sobic010G206300--Sobic001G145400 Sobic007G054800 Sobic007G054800 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic010G206300--Sobic009G084900 Sobic001G455800 Sobic001G455800 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic006G077200--Sobic009G084900 Sobic006G077200--Sobic010G185400 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic006G077200--Sobic008G082500 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic010G059500--Sobic001G035200 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G493200--Sobic001G433800 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic002G020700--Sobic008G082500 Sobic002G020700--Sobic007G054800 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic002G397500 Sobic002G397500 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic009G109200 Sobic009G109200 Sobic004G023100--Sobic009G109200 Sobic001G287500 Sobic001G287500 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100
Octagon: transcription factors


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