Gene annotation
Transcriptome id Sobic.007G071900.1
Synonym Sb07g005700
Functional annotation GTP-binding protein, putative, expressed
UniProt C5YIF8
Pfam PF01926 PF06071
Panther DB PTHR23305
NCBI CDD -
KEGG Orthology K06942; ribosome-binding ATPase
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G30580 : GTP binding
RAP-DB (Rice) LOC_Os08g09940.1 : GTP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a054839
Brachypodium KQJ95533
Barley HORVU3Hr1G092970.18 , HORVU3Hr1G092970.19 , HORVU3Hr1G092970.10 , HORVU3Hr1G092970.12 , HORVU3Hr1G092970.13 , HORVU3Hr1G092970.14 , HORVU3Hr1G092970.15 , HORVU3Hr1G092970.16 , HORVU3Hr1G092970.17 , HORVU3Hr1G092970.21 , HORVU3Hr1G092970.20 , HORVU3Hr1G092970.6 , HORVU3Hr1G092970.2 , HORVU3Hr1G092930.1
Wheat TraesCS3A02G419000 , TraesCS3D02G414600 , TraesCS3D02G414600 , TraesCS3B02G454300 , TraesCS3D02G414700 , TraesCS3A02G419100 , TraesCS3B02G454400 , TraesCS3B02G454400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G231500 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed K01923: phosphoribosylaminoimidazole-succinocarboxamide synthase
2 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
3 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
4 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
5 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
6 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
7 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
8 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
10 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
11 Sobic.006G049600 methyltransferase domain containing protein, expressed -
12 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
13 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
14 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
15 Sobic.002G263600 expressed protein -
16 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
17 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
18 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
19 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G071900 Sobic007G071900 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic009G075800 Sobic009G075800 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic001G455800 Sobic001G455800 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic004G257100 Sobic004G257100 Sobic007G071900--Sobic004G257100 Sobic001G333100 Sobic001G333100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic003G375200 Sobic003G375200 Sobic007G071900--Sobic003G375200 Sobic002G231500--Sobic007G071900 Sobic006G213400 Sobic006G213400 Sobic002G231500--Sobic006G213400 Sobic001G382600 Sobic001G382600 Sobic002G231500--Sobic001G382600 Sobic004G310500 Sobic004G310500 Sobic002G231500--Sobic004G310500 Sobic001G447300 Sobic001G447300 Sobic002G231500--Sobic001G447300 Sobic002G231500--Sobic002G020700 Sobic008G156700 Sobic008G156700 Sobic002G231500--Sobic008G156700 Sobic008G055900 Sobic008G055900 Sobic002G231500--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic002G231500--Sobic008G033500 Sobic009G222500 Sobic009G222500 Sobic009G075800--Sobic009G222500 Sobic004G275700 Sobic004G275700 Sobic009G075800--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic009G075800--Sobic010G020400 Sobic001G199100 Sobic001G199100 Sobic009G075800--Sobic001G199100 Sobic008G004600 Sobic008G004600 Sobic009G075800--Sobic008G004600 Sobic003G012200 Sobic003G012200 Sobic009G075800--Sobic003G012200 Sobic006G136400 Sobic006G136400 Sobic009G075800--Sobic006G136400 Sobic001G392300 Sobic001G392300 Sobic009G075800--Sobic001G392300 Sobic009G075800--Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G014800 Sobic001G014800 Sobic001G434200--Sobic001G014800 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G145400 Sobic001G145400 Sobic001G455800--Sobic001G145400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic002G020700--Sobic008G055900 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic004G257100--Sobic001G392300 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic001G333100--Sobic002G020700 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic001G333100--Sobic010G020400 Sobic001G333100--Sobic002G142900 Sobic001G333100--Sobic010G223300 Sobic001G333100--Sobic001G251100 Sobic001G333100--Sobic008G033500 Sobic003G221400--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic003G221400--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic003G221400--Sobic001G493700 Sobic001G110600 Sobic001G110600 Sobic003G221400--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic003G221400--Sobic001G004400 Sobic003G221400--Sobic001G333100 Sobic002G179400 Sobic002G179400 Sobic003G221400--Sobic002G179400 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic010G080700 Sobic010G080700 Sobic003G375200--Sobic010G080700 Sobic010G059500 Sobic010G059500 Sobic003G375200--Sobic010G059500 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic003G375200--Sobic002G179400 Sobic003G039000 Sobic003G039000 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic008G091300 Sobic008G091300 Sobic003G375200--Sobic008G091300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.