Gene annotation
Transcriptome id Sobic.006G049600.1
Synonym Sb06g013020
Functional annotation methyltransferase domain containing protein, expressed
UniProt A0A1Z5RD15
Pfam PF01564 PF08241
Panther DB PTHR12176 PTHR12176:SF18
NCBI CDD KOG2352; Predicted spermine/spermidine synthase
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT2G31740 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os04g31000.1 : methyltransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055827
Brachypodium PNT60881 , KQJ82212
Barley HORVU2Hr1G068550.9 , HORVU2Hr1G068550.4 , HORVU2Hr1G068550.5 , HORVU2Hr1G068550.6 , HORVU2Hr1G068550.7 , HORVU2Hr1G068550.2 , HORVU2Hr1G068550.3 , HORVU2Hr1G068550.8 , HORVU2Hr1G068550.16 , HORVU2Hr1G068550.14 , HORVU2Hr1G068550.15 , HORVU2Hr1G068550.12 , HORVU2Hr1G068550.13 , HORVU2Hr1G068550.10 , HORVU2Hr1G068550.11
Wheat TraesCS2B02G297600 , TraesCS2A02G280100 , TraesCS2D02G279100 , TraesCS2D02G279100
Populus -


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cDNA sequences
Sobic.006G049600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
2 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
3 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
4 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
5 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
6 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
7 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
8 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
9 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
10 Sobic.003G171500 dnaJ domain containing protein, expressed -
11 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
12 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
13 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
14 Sobic.008G088851 - -
15 Sobic.004G005100 peptidase family C78 domain containing protein, expressed -
16 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
17 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
18 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
19 Sobic.001G004400 - K14290: XPO1, exportin-1
20 Sobic.009G047200 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic006G049600 Sobic006G049600 Sobic009G101200 Sobic009G101200 Sobic006G049600--Sobic009G101200 Sobic010G003400 Sobic010G003400 Sobic006G049600--Sobic010G003400 Sobic008G009600 Sobic008G009600 Sobic006G049600--Sobic008G009600 Sobic003G375200 Sobic003G375200 Sobic006G049600--Sobic003G375200 Sobic010G053600 Sobic010G053600 Sobic006G049600--Sobic010G053600 Sobic007G071900 Sobic007G071900 Sobic006G049600--Sobic007G071900 Sobic006G231800 Sobic006G231800 Sobic006G049600--Sobic006G231800 Sobic006G086600 Sobic006G086600 Sobic006G049600--Sobic006G086600 Sobic008G051200 Sobic008G051200 Sobic006G049600--Sobic008G051200 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic001G052400 Sobic001G052400 Sobic009G101200--Sobic001G052400 Sobic009G246500 Sobic009G246500 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic009G101200--Sobic006G049600 Sobic010G003400--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic008G009600--Sobic001G145400 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300 Sobic010G080700 Sobic010G080700 Sobic003G375200--Sobic010G080700 Sobic010G059500 Sobic010G059500 Sobic003G375200--Sobic010G059500 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic002G179400 Sobic002G179400 Sobic003G375200--Sobic002G179400 Sobic003G039000 Sobic003G039000 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic008G091300 Sobic008G091300 Sobic003G375200--Sobic008G091300 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic009G109200 Sobic009G109200 Sobic010G053600--Sobic009G109200 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic009G075800 Sobic009G075800 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic001G455800 Sobic001G455800 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic004G257100 Sobic004G257100 Sobic007G071900--Sobic004G257100 Sobic001G333100 Sobic001G333100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic007G071900--Sobic003G375200 Sobic001G422500 Sobic001G422500 Sobic006G231800--Sobic001G422500 Sobic009G145101 Sobic009G145101 Sobic006G231800--Sobic009G145101 Sobic002G378100 Sobic002G378100 Sobic006G231800--Sobic002G378100 Sobic006G185200 Sobic006G185200 Sobic006G231800--Sobic006G185200 Sobic009G213200 Sobic009G213200 Sobic006G231800--Sobic009G213200 Sobic006G231800--Sobic006G049600 Sobic001G119600 Sobic001G119600 Sobic006G231800--Sobic001G119600 Sobic006G231800--Sobic010G003400 Sobic002G373950 Sobic002G373950 Sobic006G231800--Sobic002G373950 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic008G051200--Sobic001G089600 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic008G051200--Sobic004G030800
Octagon: transcription factors


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