Gene annotation
Transcriptome id Sobic.010G080700.3,Sobic.010G080700.2
Synonym Sb10g006995, NRPC2
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt A0A1W0VS04 , A0A194YHZ1
Pfam PF04567 PF04565 PF04566 PF04560 PF00562 PF04567 PF04565 PF04561 PF04566 PF04560 PF04563 PF00562
Panther DB PTHR20856 PTHR20856:SF8
NCBI CDD -
KEGG Orthology K03021; RPC2, DNA-directed RNA polymerase III subunit RPC2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G45140 : nuclear RNA polymerase C2
RAP-DB (Rice) LOC_Os03g28960.1 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a041280 , Zm00025a041284 , Zm00025a041289 , Zm00025a041240 , Zm00025a041241 , Zm00025a041260 , Zm00025a041285 , Zm00025a041299 , Zm00025a041290 , Zm00025a041250 , Zm00025a041256 , Zm00025a041254 , Zm00025a041275 , Zm00025a041279
Brachypodium PNT66016 , KQJ93630
Barley HORVU6Hr1G029880.28 , HORVU6Hr1G029880.29 , HORVU6Hr1G029880.24 , HORVU6Hr1G029880.25 , HORVU6Hr1G029880.26 , HORVU6Hr1G029880.27 , HORVU6Hr1G029880.20 , HORVU6Hr1G029880.21 , HORVU6Hr1G029880.22 , HORVU6Hr1G029880.23 , HORVU6Hr1G029880.10 , HORVU6Hr1G029880.13 , HORVU6Hr1G029880.12 , HORVU6Hr1G029880.15 , HORVU6Hr1G029880.14 , HORVU6Hr1G029880.17 , HORVU6Hr1G029880.16 , HORVU6Hr1G029880.19 , HORVU6Hr1G029880.18 , HORVU6Hr1G029880.5 , HORVU6Hr1G029880.4 , HORVU6Hr1G029880.7 , HORVU6Hr1G029880.6 , HORVU6Hr1G029880.1 , HORVU6Hr1G029880.3 , HORVU6Hr1G029880.2 , HORVU6Hr1G029880.9 , HORVU6Hr1G029880.8 , HORVU6Hr1G029880.38 , HORVU6Hr1G029880.37 , HORVU6Hr1G029880.36 , HORVU6Hr1G029880.35 , HORVU6Hr1G029880.34 , HORVU6Hr1G029880.33 , HORVU6Hr1G029880.32 , HORVU6Hr1G029880.31 , HORVU6Hr1G029880.30
Wheat TraesCS6B02G013400 , TraesCS6A02G150300 , TraesCS6D02G011300 , TraesCS5A02G508200 , TraesCS5A02G508200 , TraesCS4B02G338400 , TraesCS6B02G178400 , TraesCS6B02G178400 , TraesCS6B02G178400 , TraesCS6D02G140000 , TraesCS6D02G140000
Populus PNS99642 , PNS99641 , PNS99640 , PNS99638 , PNS99639


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
2 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
3 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.002G179400 DNA binding protein, putative, expressed -
5 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
6 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
7 Sobic.008G124800 expressed protein -
8 Sobic.004G322400 WD40-like, putative, expressed -
9 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
10 Sobic.004G005100 peptidase family C78 domain containing protein, expressed -
11 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
12 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
13 Sobic.002G429300 importin subunit beta, putative, expressed -
14 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
15 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
16 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
17 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
18 Sobic.001G004400 - K14290: XPO1, exportin-1
19 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
20 Sobic.008G088872 - -


Gene co-expression network
sample Sobic010G080700 Sobic010G080700 Sobic003G375200 Sobic003G375200 Sobic010G080700--Sobic003G375200 Sobic003G221400 Sobic003G221400 Sobic010G080700--Sobic003G221400 Sobic005G162500 Sobic005G162500 Sobic010G080700--Sobic005G162500 Sobic002G179400 Sobic002G179400 Sobic010G080700--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic010G080700--Sobic010G059500 Sobic001G089600 Sobic001G089600 Sobic010G080700--Sobic001G089600 Sobic008G124800 Sobic008G124800 Sobic010G080700--Sobic008G124800 Sobic004G322400 Sobic004G322400 Sobic010G080700--Sobic004G322400 Sobic004G131300 Sobic004G131300 Sobic010G080700--Sobic004G131300 Sobic003G375200--Sobic010G080700 Sobic003G375200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic003G375200--Sobic002G179400 Sobic003G039000 Sobic003G039000 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic008G091300 Sobic008G091300 Sobic003G375200--Sobic008G091300 Sobic007G054800 Sobic007G054800 Sobic003G221400--Sobic007G054800 Sobic003G221400--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic003G221400--Sobic001G493700 Sobic001G110600 Sobic001G110600 Sobic003G221400--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic003G221400--Sobic001G004400 Sobic001G333100 Sobic001G333100 Sobic003G221400--Sobic001G333100 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic002G179400--Sobic001G493700 Sobic002G042600 Sobic002G042600 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic002G179400--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic001G089600--Sobic004G322400 Sobic001G089600--Sobic009G084900 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic004G322400--Sobic002G401500 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic004G322400--Sobic008G124800 Sobic004G322400--Sobic002G179400 Sobic004G322400--Sobic010G059500 Sobic004G322400--Sobic001G065100 Sobic010G275500 Sobic010G275500 Sobic004G322400--Sobic010G275500 Sobic004G131300--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic004G131300--Sobic010G059500 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700
Octagon: transcription factors


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