Gene annotation
Transcriptome id Sobic.007G106700.1
Synonym Sb07g014990
Functional annotation NOL1/NOP2/sun family protein, putative, expressed
UniProt A0A1Z5RA94
Pfam PF01189
Panther DB PTHR22807 PTHR22807:SF34
NCBI CDD KOG1122; tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G06560 : NOL1/NOP2/sun family protein
RAP-DB (Rice) LOC_Os08g27824.1 : NOL1/NOP2/sun family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029849
Brachypodium KQJ96230 , KQJ96231 , PNT67160
Barley HORVU7Hr1G089720.15 , HORVU7Hr1G089720.14 , HORVU7Hr1G089720.13 , HORVU7Hr1G089720.12 , HORVU7Hr1G089720.11 , HORVU7Hr1G089720.10 , HORVU7Hr1G089720.8 , HORVU7Hr1G089720.7 , HORVU7Hr1G089720.6 , HORVU7Hr1G089720.5 , HORVU7Hr1G089720.4 , HORVU7Hr1G089720.2 , HORVU7Hr1G089720.1
Wheat TraesCS7B02G277100 , TraesCS7A02G375500 , TraesCS7D02G372000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
2 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
3 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
4 Sobic.006G049600 methyltransferase domain containing protein, expressed -
5 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
6 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
7 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
8 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
9 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
10 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
11 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
12 Sobic.006G128400 PPR repeat containing protein, expressed -
13 Sobic.010G114900 expressed protein -
14 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
15 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
16 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
17 Sobic.001G004400 - K14290: XPO1, exportin-1
18 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
19 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
20 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1


Gene co-expression network
sample Sobic007G106700 Sobic007G106700 Sobic001G453400 Sobic001G453400 Sobic007G106700--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic007G106700--Sobic010G003400 Sobic002G234300 Sobic002G234300 Sobic007G106700--Sobic002G234300 Sobic006G049600 Sobic006G049600 Sobic007G106700--Sobic006G049600 Sobic002G071400 Sobic002G071400 Sobic007G106700--Sobic002G071400 Sobic004G027500 Sobic004G027500 Sobic007G106700--Sobic004G027500 Sobic001G501400 Sobic001G501400 Sobic007G106700--Sobic001G501400 Sobic003G156500 Sobic003G156500 Sobic007G106700--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic007G106700--Sobic009G246500 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G052400 Sobic001G052400 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic008G049100 Sobic008G049100 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic002G234300--Sobic001G453400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic002G234300--Sobic003G199300 Sobic006G049600--Sobic009G101200 Sobic006G049600--Sobic010G003400 Sobic008G009600 Sobic008G009600 Sobic006G049600--Sobic008G009600 Sobic003G375200 Sobic003G375200 Sobic006G049600--Sobic003G375200 Sobic010G053600 Sobic010G053600 Sobic006G049600--Sobic010G053600 Sobic007G071900 Sobic007G071900 Sobic006G049600--Sobic007G071900 Sobic006G231800 Sobic006G231800 Sobic006G049600--Sobic006G231800 Sobic006G049600--Sobic006G086600 Sobic008G051200 Sobic008G051200 Sobic006G049600--Sobic008G051200 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic010G205900 Sobic010G205900 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic003G123200 Sobic003G123200 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic004G027500--Sobic007G106700 Sobic003G275600 Sobic003G275600 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic002G378100 Sobic002G378100 Sobic004G027500--Sobic002G378100 Sobic004G027500--Sobic002G071400 Sobic003G014700 Sobic003G014700 Sobic004G027500--Sobic003G014700 Sobic010G206300 Sobic010G206300 Sobic004G027500--Sobic010G206300 Sobic004G027500--Sobic001G501400 Sobic004G027500--Sobic003G123200 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic003G156500--Sobic001G453400 Sobic003G156500--Sobic009G217200 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic003G156500--Sobic004G320500 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200
Octagon: transcription factors


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