Gene annotation
Transcriptome id Sobic.004G027500.1
Synonym Sb04g002430, ATTIP49A, RIN1
Functional annotation ruvB-like, putative, expressed
UniProt A0A194YNG2
Pfam PF06068
Panther DB PTHR11093
NCBI CDD -
KEGG Orthology K04499; RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
Gene Ontology GO:0005524; ATP binding GO:0003678DNA helicase activity


Orthologs (automatic annotation)
TAIR AT5G22330 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g62040.1 : ruvB-like, putative, expressed
MaizeGDB (Corn) Zm00025a034977 , Zm00025a018830
Brachypodium KQK10483
Barley HORVU4Hr1G006840.30 , HORVU4Hr1G006800.1 , HORVU4Hr1G006800.2 , HORVU4Hr1G006840.18 , HORVU4Hr1G006840.19 , HORVU4Hr1G006840.16 , HORVU4Hr1G006840.17 , HORVU4Hr1G006840.14 , HORVU4Hr1G006840.15 , HORVU4Hr1G006840.12 , HORVU4Hr1G006840.13 , HORVU4Hr1G006840.10 , HORVU4Hr1G006840.11 , HORVU4Hr1G006840.27 , HORVU4Hr1G006840.26 , HORVU4Hr1G006840.25 , HORVU4Hr1G006840.24 , HORVU4Hr1G006840.23 , HORVU4Hr1G006840.22 , HORVU4Hr1G006840.21 , HORVU4Hr1G006840.20 , HORVU4Hr1G006840.29 , HORVU4Hr1G006840.28 , HORVU4Hr1G006840.8 , HORVU4Hr1G006840.9 , HORVU4Hr1G006840.4 , HORVU4Hr1G006840.5 , HORVU4Hr1G006840.6 , HORVU4Hr1G006840.7 , HORVU4Hr1G006840.1 , HORVU4Hr1G006840.2 , HORVU4Hr1G006840.3 , HORVU1Hr1G084700.1 , HORVU1Hr1G084700.2 , HORVU1Hr1G084700.3 , HORVU1Hr1G084700.4 , HORVU1Hr1G084700.5 , HORVU1Hr1G084700.6 , HORVU1Hr1G084700.7 , HORVU1Hr1G084700.8 , HORVU1Hr1G084700.9
Wheat TraesCS4A02G271400 , TraesCS3B02G047500 , TraesCS4A02G271400 , TraesCS3A02G036500 , TraesCS3A02G036500 , TraesCS3D02G043600 , TraesCS4B02G042600 , TraesCS4B02G042600 , TraesCS4D02G040000 , TraesCS4D02G040000
Populus PNT42155 , PNT42145 , PNT21663 , PNT21665 , PNT21664


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
2 Sobic.003G275600 ribosomal RNA assembly protein mis3, putative, expressed K06961: ribosomal RNA assembly protein
3 Sobic.010G017900 NUC153 domain containing protein, expressed K14788: NOL10, ribosome biogenesis protein ENP2
4 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
5 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
6 Sobic.003G014700 pentatricopeptide, putative, expressed -
7 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
8 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
9 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
10 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
11 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
12 Sobic.003G121200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
13 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
14 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
15 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
16 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
17 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
18 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
19 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
20 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -


Gene co-expression network
sample Sobic004G027500 Sobic004G027500 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic003G275600 Sobic003G275600 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic002G378100 Sobic002G378100 Sobic004G027500--Sobic002G378100 Sobic002G071400 Sobic002G071400 Sobic004G027500--Sobic002G071400 Sobic003G014700 Sobic003G014700 Sobic004G027500--Sobic003G014700 Sobic010G206300 Sobic010G206300 Sobic004G027500--Sobic010G206300 Sobic001G501400 Sobic001G501400 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic001G453400 Sobic001G453400 Sobic007G106700--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic007G106700--Sobic010G003400 Sobic002G234300 Sobic002G234300 Sobic007G106700--Sobic002G234300 Sobic006G049600 Sobic006G049600 Sobic007G106700--Sobic006G049600 Sobic007G106700--Sobic002G071400 Sobic007G106700--Sobic004G027500 Sobic007G106700--Sobic001G501400 Sobic003G156500 Sobic003G156500 Sobic007G106700--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic007G106700--Sobic009G246500 Sobic001G358600 Sobic001G358600 Sobic003G275600--Sobic001G358600 Sobic003G275600--Sobic004G027500 Sobic003G275600--Sobic003G156500 Sobic001G376400 Sobic001G376400 Sobic003G275600--Sobic001G376400 Sobic003G275600--Sobic001G453400 Sobic003G275600--Sobic001G501400 Sobic002G052700 Sobic002G052700 Sobic003G275600--Sobic002G052700 Sobic003G275600--Sobic010G206300 Sobic002G047000 Sobic002G047000 Sobic003G275600--Sobic002G047000 Sobic006G086600 Sobic006G086600 Sobic010G017900--Sobic006G086600 Sobic006G221600 Sobic006G221600 Sobic010G017900--Sobic006G221600 Sobic010G017900--Sobic010G003400 Sobic010G017900--Sobic004G027500 Sobic009G101200 Sobic009G101200 Sobic010G017900--Sobic009G101200 Sobic007G077900 Sobic007G077900 Sobic010G017900--Sobic007G077900 Sobic010G017900--Sobic009G246500 Sobic010G017900--Sobic001G453400 Sobic010G017900--Sobic002G071400 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic008G049100 Sobic008G049100 Sobic002G071400--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic010G205900 Sobic010G205900 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic003G014700--Sobic002G378100 Sobic005G028300 Sobic005G028300 Sobic003G014700--Sobic005G028300 Sobic003G014700--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic007G054800 Sobic007G054800 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic001G455800 Sobic001G455800 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic001G501400--Sobic001G358600 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic006G125900 Sobic006G125900 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.