Gene annotation
Transcriptome id Sobic.003G275600.1
Synonym Sb03g032750
Functional annotation ribosomal RNA assembly protein mis3, putative, expressed
UniProt C5XI95
Pfam -
Panther DB PTHR12581
NCBI CDD KOG2874; rRNA processing protein
KEGG Orthology K06961; ribosomal RNA assembly protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08420 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os10g31520.1 : ribosomal RNA assembly protein mis3, putative, expressed
MaizeGDB (Corn) Zm00025a027806
Brachypodium KQK23693 , KQK09448
Barley -
Wheat TraesCS3B02G277800 , TraesCS3B02G277800 , TraesCS3A02G248900 , TraesCS3A02G248900 , TraesCS3D02G248900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G358600 LTV1, putative, expressed K14798: protein LTV1
2 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
3 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
4 Sobic.001G376400 Brix domain containing protein, putative, expressed K14859: ribosome biogenesis protein SSF1/2
5 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
6 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
7 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
8 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
9 Sobic.002G047000 YT521-B, putative, expressed -
10 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
11 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
12 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
13 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
14 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
15 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
16 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
17 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
18 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
19 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
20 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase


Gene co-expression network
sample Sobic003G275600 Sobic003G275600 Sobic001G358600 Sobic001G358600 Sobic003G275600--Sobic001G358600 Sobic004G027500 Sobic004G027500 Sobic003G275600--Sobic004G027500 Sobic003G156500 Sobic003G156500 Sobic003G275600--Sobic003G156500 Sobic001G376400 Sobic001G376400 Sobic003G275600--Sobic001G376400 Sobic001G453400 Sobic001G453400 Sobic003G275600--Sobic001G453400 Sobic001G501400 Sobic001G501400 Sobic003G275600--Sobic001G501400 Sobic002G052700 Sobic002G052700 Sobic003G275600--Sobic002G052700 Sobic010G206300 Sobic010G206300 Sobic003G275600--Sobic010G206300 Sobic002G047000 Sobic002G047000 Sobic003G275600--Sobic002G047000 Sobic001G358600--Sobic001G501400 Sobic001G358600--Sobic003G156500 Sobic001G358600--Sobic003G275600 Sobic001G173800 Sobic001G173800 Sobic001G358600--Sobic001G173800 Sobic010G003400 Sobic010G003400 Sobic001G358600--Sobic010G003400 Sobic001G358600--Sobic001G453400 Sobic006G125900 Sobic006G125900 Sobic001G358600--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic001G358600--Sobic002G262100 Sobic009G246500 Sobic009G246500 Sobic001G358600--Sobic009G246500 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic002G378100 Sobic002G378100 Sobic004G027500--Sobic002G378100 Sobic002G071400 Sobic002G071400 Sobic004G027500--Sobic002G071400 Sobic003G014700 Sobic003G014700 Sobic004G027500--Sobic003G014700 Sobic004G027500--Sobic010G206300 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic003G156500--Sobic001G453400 Sobic009G217200 Sobic009G217200 Sobic003G156500--Sobic009G217200 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic001G376400--Sobic003G275600 Sobic001G376400--Sobic010G206300 Sobic008G160000 Sobic008G160000 Sobic001G376400--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic001G376400--Sobic001G455800 Sobic009G249800 Sobic009G249800 Sobic001G376400--Sobic009G249800 Sobic009G237200 Sobic009G237200 Sobic001G376400--Sobic009G237200 Sobic001G376400--Sobic004G027500 Sobic004G340400 Sobic004G340400 Sobic001G376400--Sobic004G340400 Sobic001G376400--Sobic001G501400 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G052400 Sobic001G052400 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic001G453400--Sobic006G125900 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic008G049100 Sobic008G049100 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic001G251100 Sobic001G251100 Sobic002G052700--Sobic001G251100 Sobic004G357400 Sobic004G357400 Sobic002G052700--Sobic004G357400 Sobic003G042400 Sobic003G042400 Sobic002G052700--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic002G052700--Sobic004G321700 Sobic001G393900 Sobic001G393900 Sobic002G052700--Sobic001G393900 Sobic001G003500 Sobic001G003500 Sobic002G052700--Sobic001G003500 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic008G147200 Sobic008G147200 Sobic002G052700--Sobic008G147200 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic007G054800 Sobic007G054800 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic009G045900 Sobic009G045900 Sobic002G047000--Sobic009G045900 Sobic002G047000--Sobic008G160000 Sobic002G234300 Sobic002G234300 Sobic002G047000--Sobic002G234300 Sobic001G431400 Sobic001G431400 Sobic002G047000--Sobic001G431400 Sobic004G256000 Sobic004G256000 Sobic002G047000--Sobic004G256000 Sobic010G142700 Sobic010G142700 Sobic002G047000--Sobic010G142700 Sobic002G047000--Sobic001G052400 Sobic009G016400 Sobic009G016400 Sobic002G047000--Sobic009G016400 Sobic008G169200 Sobic008G169200 Sobic002G047000--Sobic008G169200
Octagon: transcription factors


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