Gene annotation
Transcriptome id Sobic.001G376400.1
Synonym PPAN, Sb01g035720
Functional annotation Brix domain containing protein, putative, expressed
UniProt C5X0P0
Pfam PF04427
Panther DB PTHR12661
NCBI CDD KOG2963; RNA-binding protein required for 60S ribosomal subunit biogenesis
KEGG Orthology K14859; ribosome biogenesis protein SSF1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61770 : PETER PAN-like protein
RAP-DB (Rice) LOC_Os03g22350.1 : Brix domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002398
Brachypodium KQK21747
Barley HORVU4Hr1G046720.4 , HORVU4Hr1G046720.1 , HORVU4Hr1G046720.3 , HORVU4Hr1G046720.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G275600 ribosomal RNA assembly protein mis3, putative, expressed K06961: ribosomal RNA assembly protein
2 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
3 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
5 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
6 Sobic.009G237200 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@ribosomal protein L13("PubMedID : 26759170,PubMedID : 24597475")@ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
7 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
8 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
9 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
10 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
11 Sobic.001G007900 BCCIP, putative, expressed K15262: BCP1, protein BCP1
12 Sobic.006G121400 surfeit locus protein, putative, expressed -
13 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
14 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
15 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
16 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
17 Sobic.010G055700 tetratricopeptide repeat domain containing protein, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
18 Sobic.004G211100 RNA binding protein, putative, expressed K11090: LA, lupus La protein
19 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
20 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ


Gene co-expression network
sample Sobic001G376400 Sobic001G376400 Sobic003G275600 Sobic003G275600 Sobic001G376400--Sobic003G275600 Sobic010G206300 Sobic010G206300 Sobic001G376400--Sobic010G206300 Sobic008G160000 Sobic008G160000 Sobic001G376400--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic001G376400--Sobic001G455800 Sobic009G249800 Sobic009G249800 Sobic001G376400--Sobic009G249800 Sobic009G237200 Sobic009G237200 Sobic001G376400--Sobic009G237200 Sobic004G027500 Sobic004G027500 Sobic001G376400--Sobic004G027500 Sobic004G340400 Sobic004G340400 Sobic001G376400--Sobic004G340400 Sobic001G501400 Sobic001G501400 Sobic001G376400--Sobic001G501400 Sobic001G358600 Sobic001G358600 Sobic003G275600--Sobic001G358600 Sobic003G275600--Sobic004G027500 Sobic003G156500 Sobic003G156500 Sobic003G275600--Sobic003G156500 Sobic003G275600--Sobic001G376400 Sobic001G453400 Sobic001G453400 Sobic003G275600--Sobic001G453400 Sobic003G275600--Sobic001G501400 Sobic002G052700 Sobic002G052700 Sobic003G275600--Sobic002G052700 Sobic003G275600--Sobic010G206300 Sobic002G047000 Sobic002G047000 Sobic003G275600--Sobic002G047000 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic007G054800 Sobic007G054800 Sobic010G206300--Sobic007G054800 Sobic003G405500 Sobic003G405500 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic001G455800--Sobic009G016400 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic001G251600 Sobic001G251600 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic009G237200--Sobic001G376400 Sobic002G394600 Sobic002G394600 Sobic009G237200--Sobic002G394600 Sobic009G237200--Sobic001G251600 Sobic006G020900 Sobic006G020900 Sobic009G237200--Sobic006G020900 Sobic009G237200--Sobic002G408900 Sobic006G155100 Sobic006G155100 Sobic009G237200--Sobic006G155100 Sobic004G171200 Sobic004G171200 Sobic009G237200--Sobic004G171200 Sobic004G291400 Sobic004G291400 Sobic009G237200--Sobic004G291400 Sobic002G412700 Sobic002G412700 Sobic009G237200--Sobic002G412700 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic002G378100 Sobic002G378100 Sobic004G027500--Sobic002G378100 Sobic002G071400 Sobic002G071400 Sobic004G027500--Sobic002G071400 Sobic003G014700 Sobic003G014700 Sobic004G027500--Sobic003G014700 Sobic004G027500--Sobic010G206300 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic006G125900 Sobic006G125900 Sobic001G501400--Sobic006G125900 Sobic008G049100 Sobic008G049100 Sobic001G501400--Sobic008G049100 Sobic010G003400 Sobic010G003400 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.