Gene annotation
Transcriptome id Sobic.006G121400.2,Sobic.006G121400.1
Synonym Sb06g020200
Functional annotation surfeit locus protein, putative, expressed
UniProt A0A1B6PLL9 , A0A1B6PLL7
Pfam PF05477
Panther DB PTHR32175 PTHR32175:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40570 : Surfeit locus protein 2 (SURF2)
RAP-DB (Rice) LOC_Os04g40430.2,LOC_Os04g40430.1 : surfeit locus protein, putative, expressed
MaizeGDB (Corn) Zm00025a056309 , Zm00025a010983
Brachypodium KQJ83172 , KQJ83171 , KQJ83170
Barley HORVU2Hr1G082940.5 , HORVU2Hr1G082940.4 , HORVU2Hr1G082940.3 , HORVU2Hr1G082940.2 , HORVU2Hr1G082940.1
Wheat TraesCS2D02G337500 , TraesCS2D02G337500 , TraesCS2B02G356700 , TraesCS2B02G356700 , TraesCS2A02G325200 , TraesCS2A02G325200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G032400 mitotic checkpoint protein, putative, expressed K02180: cell cycle arrest protein BUB3
2 Sobic.007G177300 kinetochore protein, putative, expressed K11547: NDC80, HEC1, kinetochore protein NDC80
3 Sobic.002G371200 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
4 Sobic.001G444600 - -
5 Sobic.004G211100 RNA binding protein, putative, expressed K11090: LA, lupus La protein
6 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
7 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
8 Sobic.001G376400 Brix domain containing protein, putative, expressed K14859: ribosome biogenesis protein SSF1/2
9 Sobic.003G275600 ribosomal RNA assembly protein mis3, putative, expressed K06961: ribosomal RNA assembly protein
10 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
11 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
12 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
13 Sobic.004G198900 expressed protein -
14 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
15 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
16 Sobic.001G341500 transcription initiation factor IID, putative, expressed K03133: TAF9B, transcription initiation factor TFIID subunit 9B
17 Sobic.007G134100 expressed protein -
18 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
19 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
20 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45


Gene co-expression network
sample Sobic006G121400 Sobic006G121400 Sobic010G032400 Sobic010G032400 Sobic006G121400--Sobic010G032400 Sobic007G177300 Sobic007G177300 Sobic006G121400--Sobic007G177300 Sobic002G371200 Sobic002G371200 Sobic006G121400--Sobic002G371200 Sobic001G444600 Sobic001G444600 Sobic006G121400--Sobic001G444600 Sobic004G211100 Sobic004G211100 Sobic006G121400--Sobic004G211100 Sobic006G272200 Sobic006G272200 Sobic006G121400--Sobic006G272200 Sobic004G212700 Sobic004G212700 Sobic006G121400--Sobic004G212700 Sobic001G376400 Sobic001G376400 Sobic006G121400--Sobic001G376400 Sobic003G275600 Sobic003G275600 Sobic006G121400--Sobic003G275600 Sobic010G032400--Sobic006G121400 Sobic004G198900 Sobic004G198900 Sobic010G032400--Sobic004G198900 Sobic006G221400 Sobic006G221400 Sobic010G032400--Sobic006G221400 Sobic003G113800 Sobic003G113800 Sobic010G032400--Sobic003G113800 Sobic001G119900 Sobic001G119900 Sobic010G032400--Sobic001G119900 Sobic010G032400--Sobic004G212700 Sobic006G233000 Sobic006G233000 Sobic010G032400--Sobic006G233000 Sobic001G234200 Sobic001G234200 Sobic010G032400--Sobic001G234200 Sobic004G079200 Sobic004G079200 Sobic010G032400--Sobic004G079200 Sobic008G129600 Sobic008G129600 Sobic007G177300--Sobic008G129600 Sobic001G467100 Sobic001G467100 Sobic007G177300--Sobic001G467100 Sobic009G231700 Sobic009G231700 Sobic007G177300--Sobic009G231700 Sobic001G382600 Sobic001G382600 Sobic007G177300--Sobic001G382600 Sobic010G020400 Sobic010G020400 Sobic007G177300--Sobic010G020400 Sobic002G394600 Sobic002G394600 Sobic007G177300--Sobic002G394600 Sobic009G077600 Sobic009G077600 Sobic007G177300--Sobic009G077600 Sobic002G014400 Sobic002G014400 Sobic007G177300--Sobic002G014400 Sobic008G103300 Sobic008G103300 Sobic007G177300--Sobic008G103300 Sobic009G012700 Sobic009G012700 Sobic002G371200--Sobic009G012700 Sobic001G431700 Sobic001G431700 Sobic002G371200--Sobic001G431700 Sobic009G258600 Sobic009G258600 Sobic002G371200--Sobic009G258600 Sobic010G210000 Sobic010G210000 Sobic002G371200--Sobic010G210000 Sobic002G371200--Sobic006G121400 Sobic003G442400 Sobic003G442400 Sobic002G371200--Sobic003G442400 Sobic001G025600 Sobic001G025600 Sobic002G371200--Sobic001G025600 Sobic003G367900 Sobic003G367900 Sobic002G371200--Sobic003G367900 Sobic006G079900 Sobic006G079900 Sobic002G371200--Sobic006G079900 Sobic001G444600--Sobic006G121400 Sobic001G444600--Sobic006G221400 Sobic001G341500 Sobic001G341500 Sobic001G444600--Sobic001G341500 Sobic001G444600--Sobic010G032400 Sobic001G444600--Sobic007G177300 Sobic003G395300 Sobic003G395300 Sobic001G444600--Sobic003G395300 Sobic001G444600--Sobic001G119900 Sobic001G444600--Sobic006G272200 Sobic001G239800 Sobic001G239800 Sobic001G444600--Sobic001G239800 Sobic001G008200 Sobic001G008200 Sobic004G211100--Sobic001G008200 Sobic002G263700 Sobic002G263700 Sobic004G211100--Sobic002G263700 Sobic001G145400 Sobic001G145400 Sobic004G211100--Sobic001G145400 Sobic006G125900 Sobic006G125900 Sobic004G211100--Sobic006G125900 Sobic002G399200 Sobic002G399200 Sobic004G211100--Sobic002G399200 Sobic004G309900 Sobic004G309900 Sobic004G211100--Sobic004G309900 Sobic004G211100--Sobic008G103300 Sobic006G270600 Sobic006G270600 Sobic004G211100--Sobic006G270600 Sobic001G259000 Sobic001G259000 Sobic004G211100--Sobic001G259000 Sobic010G085200 Sobic010G085200 Sobic006G272200--Sobic010G085200 Sobic003G119400 Sobic003G119400 Sobic006G272200--Sobic003G119400 Sobic001G362300 Sobic001G362300 Sobic006G272200--Sobic001G362300 Sobic002G394800 Sobic002G394800 Sobic006G272200--Sobic002G394800 Sobic009G007700 Sobic009G007700 Sobic006G272200--Sobic009G007700 Sobic004G074300 Sobic004G074300 Sobic006G272200--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G272200--Sobic001G370300 Sobic006G272200--Sobic006G233000 Sobic008G009600 Sobic008G009600 Sobic006G272200--Sobic008G009600 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic003G274400 Sobic003G274400 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic004G212700--Sobic002G394800 Sobic004G212700--Sobic004G198900 Sobic001G376400--Sobic003G275600 Sobic010G206300 Sobic010G206300 Sobic001G376400--Sobic010G206300 Sobic008G160000 Sobic008G160000 Sobic001G376400--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic001G376400--Sobic001G455800 Sobic009G249800 Sobic009G249800 Sobic001G376400--Sobic009G249800 Sobic009G237200 Sobic009G237200 Sobic001G376400--Sobic009G237200 Sobic004G027500 Sobic004G027500 Sobic001G376400--Sobic004G027500 Sobic004G340400 Sobic004G340400 Sobic001G376400--Sobic004G340400 Sobic001G501400 Sobic001G501400 Sobic001G376400--Sobic001G501400 Sobic001G358600 Sobic001G358600 Sobic003G275600--Sobic001G358600 Sobic003G275600--Sobic004G027500 Sobic003G156500 Sobic003G156500 Sobic003G275600--Sobic003G156500 Sobic003G275600--Sobic001G376400 Sobic001G453400 Sobic001G453400 Sobic003G275600--Sobic001G453400 Sobic003G275600--Sobic001G501400 Sobic002G052700 Sobic002G052700 Sobic003G275600--Sobic002G052700 Sobic003G275600--Sobic010G206300 Sobic002G047000 Sobic002G047000 Sobic003G275600--Sobic002G047000
Octagon: transcription factors


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