Gene annotation
Transcriptome id Sobic.002G371200.1
Synonym Sb02g039000, SNRNP-G
Functional annotation LSM domain containing protein, expressed
UniProt C5XDY9
Pfam PF01423
Panther DB PTHR10553 PTHR10553:SF9
NCBI CDD KOG1780; Small Nuclear ribonucleoprotein G
KEGG Orthology K11099; SNRPG, small nuclear ribonucleoprotein G
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23930 : probable small nuclear ribonucleoprotein G
RAP-DB (Rice) LOC_Os03g29740.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G031890.7 , HORVU2Hr1G031890.6 , HORVU2Hr1G031890.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
2 Sobic.001G431700 expressed protein K18171: COX assembly mitochondrial protein 1
3 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
4 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
5 Sobic.006G121400 surfeit locus protein, putative, expressed -
6 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
7 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
8 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
9 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
10 Sobic.009G124400 similar to Putative uncharacterized protein(PubMedID : 29862293)@LSM domain containing protein, expressed K12624: U6 snRNA-associated Sm-like protein LSm5
11 Sobic.006G281200 csAtPR5, putative, expressed -
12 Sobic.003G190800 GA18326-PA, putative, expressed -
13 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
14 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
15 Sobic.008G018000 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
16 Sobic.003G073900 expressed protein -
17 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
18 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
19 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
20 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic002G371200 Sobic002G371200 Sobic009G012700 Sobic009G012700 Sobic002G371200--Sobic009G012700 Sobic001G431700 Sobic001G431700 Sobic002G371200--Sobic001G431700 Sobic009G258600 Sobic009G258600 Sobic002G371200--Sobic009G258600 Sobic010G210000 Sobic010G210000 Sobic002G371200--Sobic010G210000 Sobic006G121400 Sobic006G121400 Sobic002G371200--Sobic006G121400 Sobic003G442400 Sobic003G442400 Sobic002G371200--Sobic003G442400 Sobic001G025600 Sobic001G025600 Sobic002G371200--Sobic001G025600 Sobic003G367900 Sobic003G367900 Sobic002G371200--Sobic003G367900 Sobic006G079900 Sobic006G079900 Sobic002G371200--Sobic006G079900 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic006G115000 Sobic006G115000 Sobic009G012700--Sobic006G115000 Sobic002G045100 Sobic002G045100 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic004G002350 Sobic004G002350 Sobic009G012700--Sobic004G002350 Sobic008G018000 Sobic008G018000 Sobic001G431700--Sobic008G018000 Sobic001G431700--Sobic009G012700 Sobic001G431700--Sobic006G079900 Sobic001G431700--Sobic003G287300 Sobic010G018000 Sobic010G018000 Sobic001G431700--Sobic010G018000 Sobic008G093200 Sobic008G093200 Sobic001G431700--Sobic008G093200 Sobic010G013900 Sobic010G013900 Sobic001G431700--Sobic010G013900 Sobic006G052400 Sobic006G052400 Sobic001G431700--Sobic006G052400 Sobic001G431700--Sobic002G371200 Sobic003G127700 Sobic003G127700 Sobic009G258600--Sobic003G127700 Sobic009G258600--Sobic010G210000 Sobic009G258600--Sobic003G367900 Sobic003G028100 Sobic003G028100 Sobic009G258600--Sobic003G028100 Sobic009G258600--Sobic009G012700 Sobic004G137900 Sobic004G137900 Sobic009G258600--Sobic004G137900 Sobic002G331300 Sobic002G331300 Sobic009G258600--Sobic002G331300 Sobic001G096100 Sobic001G096100 Sobic009G258600--Sobic001G096100 Sobic003G190800 Sobic003G190800 Sobic009G258600--Sobic003G190800 Sobic003G018600 Sobic003G018600 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic010G210000--Sobic006G115000 Sobic003G362400 Sobic003G362400 Sobic010G210000--Sobic003G362400 Sobic010G210000--Sobic009G012700 Sobic009G050200 Sobic009G050200 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic001G018800 Sobic001G018800 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic010G032400 Sobic010G032400 Sobic006G121400--Sobic010G032400 Sobic007G177300 Sobic007G177300 Sobic006G121400--Sobic007G177300 Sobic006G121400--Sobic002G371200 Sobic001G444600 Sobic001G444600 Sobic006G121400--Sobic001G444600 Sobic004G211100 Sobic004G211100 Sobic006G121400--Sobic004G211100 Sobic006G272200 Sobic006G272200 Sobic006G121400--Sobic006G272200 Sobic004G212700 Sobic004G212700 Sobic006G121400--Sobic004G212700 Sobic001G376400 Sobic001G376400 Sobic006G121400--Sobic001G376400 Sobic003G275600 Sobic003G275600 Sobic006G121400--Sobic003G275600 Sobic003G442400--Sobic001G025600 Sobic003G442400--Sobic006G052400 Sobic004G103700 Sobic004G103700 Sobic003G442400--Sobic004G103700 Sobic008G058300 Sobic008G058300 Sobic003G442400--Sobic008G058300 Sobic005G027300 Sobic005G027300 Sobic003G442400--Sobic005G027300 Sobic003G442400--Sobic003G287300 Sobic003G442400--Sobic003G362400 Sobic003G442400--Sobic003G018600 Sobic003G442400--Sobic006G115000 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G481700 Sobic001G481700 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G025600--Sobic001G018800 Sobic001G025600--Sobic003G287300 Sobic001G404100 Sobic001G404100 Sobic003G367900--Sobic001G404100 Sobic003G367900--Sobic006G052400 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G367900--Sobic003G127700 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic007G217400 Sobic007G217400 Sobic006G079900--Sobic007G217400 Sobic009G124400 Sobic009G124400 Sobic006G079900--Sobic009G124400 Sobic006G079900--Sobic003G190800 Sobic006G079900--Sobic002G331300 Sobic006G079900--Sobic003G028100 Sobic001G542900 Sobic001G542900 Sobic006G079900--Sobic001G542900 Sobic006G079900--Sobic001G431700 Sobic006G079900--Sobic003G367900 Sobic006G079900--Sobic001G404100
Octagon: transcription factors


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