Gene annotation
Transcriptome id Sobic.007G108100.1
Synonym Sb07g015140
Functional annotation co-chaperone protein SBA1, putative, expressed
UniProt C5YKA7
Pfam PF04969
Panther DB PTHR22932 PTHR22932:SF5
NCBI CDD KOG3158; HSP90 co-chaperone p23
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02450 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os08g27070.1 : co-chaperone protein SBA1, putative, expressed
MaizeGDB (Corn) Zm00025a006184 , Zm00025a029844
Brachypodium KQJ96251
Barley HORVU7Hr1G069460.10 , HORVU7Hr1G069460.11 , HORVU7Hr1G069460.12 , HORVU7Hr1G069460.2 , HORVU7Hr1G069460.3 , HORVU7Hr1G069460.1 , HORVU7Hr1G069460.6 , HORVU7Hr1G069460.4 , HORVU7Hr1G069460.5 , HORVU7Hr1G069460.8 , HORVU7Hr1G069460.9 , HORVU7Hr1G069460.7
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G108100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
3 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
4 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
5 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
6 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
7 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
8 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
9 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
10 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
12 Sobic.008G093200 expressed protein -
13 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
14 Sobic.001G431700 expressed protein K18171: COX assembly mitochondrial protein 1
15 Sobic.006G008400 receptor protein kinase, putative, expressed -
16 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
17 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
18 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
19 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
20 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8


Gene co-expression network
sample Sobic007G108100 Sobic007G108100 Sobic010G001800 Sobic010G001800 Sobic007G108100--Sobic010G001800 Sobic010G018000 Sobic010G018000 Sobic007G108100--Sobic010G018000 Sobic003G011100 Sobic003G011100 Sobic007G108100--Sobic003G011100 Sobic003G211100 Sobic003G211100 Sobic007G108100--Sobic003G211100 Sobic002G045100 Sobic002G045100 Sobic007G108100--Sobic002G045100 Sobic009G012700 Sobic009G012700 Sobic007G108100--Sobic009G012700 Sobic001G493400 Sobic001G493400 Sobic007G108100--Sobic001G493400 Sobic001G530800 Sobic001G530800 Sobic007G108100--Sobic001G530800 Sobic009G211700 Sobic009G211700 Sobic007G108100--Sobic009G211700 Sobic001G440900 Sobic001G440900 Sobic010G001800--Sobic001G440900 Sobic010G001800--Sobic007G108100 Sobic002G241500 Sobic002G241500 Sobic010G001800--Sobic002G241500 Sobic010G159100 Sobic010G159100 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic008G093200 Sobic008G093200 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic003G326900 Sobic003G326900 Sobic010G018000--Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic007G150800 Sobic007G150800 Sobic003G011100--Sobic007G150800 Sobic006G216600 Sobic006G216600 Sobic003G011100--Sobic006G216600 Sobic001G475500 Sobic001G475500 Sobic003G011100--Sobic001G475500 Sobic006G201500 Sobic006G201500 Sobic003G011100--Sobic006G201500 Sobic003G396600 Sobic003G396600 Sobic003G011100--Sobic003G396600 Sobic009G144300 Sobic009G144300 Sobic003G011100--Sobic009G144300 Sobic006G115000 Sobic006G115000 Sobic003G011100--Sobic006G115000 Sobic003G387900 Sobic003G387900 Sobic003G011100--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic003G011100--Sobic009G233400 Sobic003G211100--Sobic007G108100 Sobic003G211100--Sobic002G045100 Sobic003G117100 Sobic003G117100 Sobic003G211100--Sobic003G117100 Sobic007G137350 Sobic007G137350 Sobic003G211100--Sobic007G137350 Sobic003G211100--Sobic010G001800 Sobic001G371100 Sobic001G371100 Sobic003G211100--Sobic001G371100 Sobic003G211100--Sobic001G530800 Sobic003G211100--Sobic010G018000 Sobic001G235700 Sobic001G235700 Sobic003G211100--Sobic001G235700 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic002G045100--Sobic010G018000 Sobic002G045100--Sobic001G371100 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic009G012700--Sobic006G115000 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic010G210000 Sobic010G210000 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic009G012700--Sobic003G011100 Sobic009G012700--Sobic004G002350 Sobic010G134100 Sobic010G134100 Sobic001G493400--Sobic010G134100 Sobic004G002500 Sobic004G002500 Sobic001G493400--Sobic004G002500 Sobic001G214900 Sobic001G214900 Sobic001G493400--Sobic001G214900 Sobic001G167500 Sobic001G167500 Sobic001G493400--Sobic001G167500 Sobic004G082700 Sobic004G082700 Sobic001G493400--Sobic004G082700 Sobic001G493400--Sobic007G108100 Sobic006G254300 Sobic006G254300 Sobic001G493400--Sobic006G254300 Sobic001G228200 Sobic001G228200 Sobic001G493400--Sobic001G228200 Sobic001G493400--Sobic001G371100 Sobic004G047200 Sobic004G047200 Sobic001G530800--Sobic004G047200 Sobic001G530800--Sobic001G214900 Sobic001G026600 Sobic001G026600 Sobic001G530800--Sobic001G026600 Sobic001G530800--Sobic001G371100 Sobic009G234400 Sobic009G234400 Sobic001G530800--Sobic009G234400 Sobic002G423500 Sobic002G423500 Sobic001G530800--Sobic002G423500 Sobic002G054000 Sobic002G054000 Sobic001G530800--Sobic002G054000 Sobic001G196100 Sobic001G196100 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000 Sobic009G211700--Sobic003G160900 Sobic001G091900 Sobic001G091900 Sobic009G211700--Sobic001G091900 Sobic009G211700--Sobic001G371100 Sobic009G040500 Sobic009G040500 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic003G198300 Sobic003G198300 Sobic009G211700--Sobic003G198300 Sobic004G326600 Sobic004G326600 Sobic009G211700--Sobic004G326600 Sobic006G098500 Sobic006G098500 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.