Gene annotation
Transcriptome id Sobic.007G034400.1
Synonym Sb07g002960
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YN17
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G54580 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g04440.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a055256
Brachypodium KQJ95009
Barley -
Wheat TraesCS7A02G307200 , TraesCS7B02G207500
Populus -


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cDNA sequences
Sobic.007G034400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
2 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
3 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
4 Sobic.003G015400 ribosomal protein S6 family protein, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
5 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
6 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
7 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
8 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
9 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
10 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
11 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
12 Sobic.010G005300 ribosomal protein L6, putative, expressed K02940: RP-L9e, large subunit ribosomal protein L9e
13 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
14 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
15 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
16 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
17 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
18 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
19 Sobic.001G202400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
20 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic007G034400 Sobic007G034400 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic005G164700 Sobic005G164700 Sobic007G034400--Sobic005G164700 Sobic008G103900 Sobic008G103900 Sobic007G034400--Sobic008G103900 Sobic003G015400 Sobic003G015400 Sobic007G034400--Sobic003G015400 Sobic001G058900 Sobic001G058900 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic002G045100 Sobic002G045100 Sobic007G034400--Sobic002G045100 Sobic009G114400--Sobic001G225700 Sobic002G049300 Sobic002G049300 Sobic009G114400--Sobic002G049300 Sobic001G085400 Sobic001G085400 Sobic009G114400--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic009G114400--Sobic007G178600 Sobic009G227400 Sobic009G227400 Sobic009G114400--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic009G114400--Sobic009G144300 Sobic003G249700 Sobic003G249700 Sobic009G114400--Sobic003G249700 Sobic006G221200 Sobic006G221200 Sobic009G114400--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic009G114400--Sobic006G081100 Sobic005G164700--Sobic007G034400 Sobic002G115000 Sobic002G115000 Sobic005G164700--Sobic002G115000 Sobic006G201500 Sobic006G201500 Sobic005G164700--Sobic006G201500 Sobic005G164700--Sobic002G045100 Sobic008G135000 Sobic008G135000 Sobic005G164700--Sobic008G135000 Sobic005G164700--Sobic001G085400 Sobic008G021100 Sobic008G021100 Sobic005G164700--Sobic008G021100 Sobic005G164700--Sobic001G058900 Sobic006G156000 Sobic006G156000 Sobic005G164700--Sobic006G156000 Sobic008G103900--Sobic007G034400 Sobic010G013900 Sobic010G013900 Sobic008G103900--Sobic010G013900 Sobic001G202400 Sobic001G202400 Sobic008G103900--Sobic001G202400 Sobic004G248900 Sobic004G248900 Sobic008G103900--Sobic004G248900 Sobic009G130400 Sobic009G130400 Sobic008G103900--Sobic009G130400 Sobic002G179000 Sobic002G179000 Sobic008G103900--Sobic002G179000 Sobic010G018000 Sobic010G018000 Sobic008G103900--Sobic010G018000 Sobic008G103900--Sobic003G015400 Sobic007G143000 Sobic007G143000 Sobic008G103900--Sobic007G143000 Sobic003G015400--Sobic007G034400 Sobic003G015400--Sobic008G021100 Sobic010G005300 Sobic010G005300 Sobic003G015400--Sobic010G005300 Sobic003G015400--Sobic001G202400 Sobic004G293100 Sobic004G293100 Sobic003G015400--Sobic004G293100 Sobic003G015400--Sobic001G510800 Sobic006G281200 Sobic006G281200 Sobic003G015400--Sobic006G281200 Sobic003G015400--Sobic001G058900 Sobic009G062000 Sobic009G062000 Sobic003G015400--Sobic009G062000 Sobic001G058900--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic009G233400 Sobic009G233400 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic001G377800 Sobic001G377800 Sobic003G025200--Sobic001G377800 Sobic003G025200--Sobic006G081100 Sobic003G025200--Sobic001G085400 Sobic002G406500 Sobic002G406500 Sobic003G025200--Sobic002G406500 Sobic003G025200--Sobic001G058900 Sobic003G025200--Sobic006G201500 Sobic003G025200--Sobic002G049300 Sobic008G058300 Sobic008G058300 Sobic003G025200--Sobic008G058300 Sobic003G025200--Sobic002G115000 Sobic001G225700--Sobic003G249700 Sobic001G225700--Sobic006G081100 Sobic008G108601 Sobic008G108601 Sobic001G225700--Sobic008G108601 Sobic001G225700--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic001G225700--Sobic002G047600 Sobic002G286900 Sobic002G286900 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic001G225700--Sobic002G115000 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G510800--Sobic001G058900 Sobic008G100000 Sobic008G100000 Sobic001G510800--Sobic008G100000 Sobic001G510800--Sobic008G108601 Sobic001G510800--Sobic001G225700 Sobic002G415500 Sobic002G415500 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic001G510800--Sobic009G227400 Sobic002G045100--Sobic007G143000 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic002G045100--Sobic010G018000 Sobic001G371100 Sobic001G371100 Sobic002G045100--Sobic001G371100
Octagon: transcription factors


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