Gene annotation
Transcriptome id Sobic.003G015400.1
Synonym Sb03g001540
Functional annotation ribosomal protein S6 family protein, putative, expressed
UniProt C5XKE8
Pfam PF01250
Panther DB PTHR21011 PTHR21011:SF5
NCBI CDD -
KEGG Orthology K02990; RP-S6, MRPS6, small subunit ribosomal protein S6
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G18760 : Translation elongation factor EF1B/ribosomal protein S6 family protein
RAP-DB (Rice) LOC_Os01g12090.1 : ribosomal protein S6 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022885 , Zm00025a035940
Brachypodium KQK03334
Barley HORVU0Hr1G006350.1 , HORVU0Hr1G006350.2 , HORVU0Hr1G006350.3 , HORVU3Hr1G029510.4 , HORVU3Hr1G029510.2 , HORVU3Hr1G029510.3 , HORVU3Hr1G029510.1
Wheat TraesCS3D02G153600 , TraesCS3A02G144800 , TraesCS3B02G171600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
2 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
3 Sobic.010G005300 ribosomal protein L6, putative, expressed K02940: RP-L9e, large subunit ribosomal protein L9e
4 Sobic.001G202400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
5 Sobic.004G293100 phosphatase, putative, expressed -
6 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
7 Sobic.006G281200 csAtPR5, putative, expressed -
8 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
9 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
10 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
11 Sobic.008G094600 - -
12 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
13 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
14 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
15 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
16 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
17 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
18 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
19 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
20 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e


Gene co-expression network
sample Sobic003G015400 Sobic003G015400 Sobic007G034400 Sobic007G034400 Sobic003G015400--Sobic007G034400 Sobic008G021100 Sobic008G021100 Sobic003G015400--Sobic008G021100 Sobic010G005300 Sobic010G005300 Sobic003G015400--Sobic010G005300 Sobic001G202400 Sobic001G202400 Sobic003G015400--Sobic001G202400 Sobic004G293100 Sobic004G293100 Sobic003G015400--Sobic004G293100 Sobic001G510800 Sobic001G510800 Sobic003G015400--Sobic001G510800 Sobic006G281200 Sobic006G281200 Sobic003G015400--Sobic006G281200 Sobic001G058900 Sobic001G058900 Sobic003G015400--Sobic001G058900 Sobic009G062000 Sobic009G062000 Sobic003G015400--Sobic009G062000 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic005G164700 Sobic005G164700 Sobic007G034400--Sobic005G164700 Sobic008G103900 Sobic008G103900 Sobic007G034400--Sobic008G103900 Sobic007G034400--Sobic003G015400 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic007G034400--Sobic001G510800 Sobic002G045100 Sobic002G045100 Sobic007G034400--Sobic002G045100 Sobic008G021100--Sobic001G058900 Sobic002G115000 Sobic002G115000 Sobic008G021100--Sobic002G115000 Sobic006G221200 Sobic006G221200 Sobic008G021100--Sobic006G221200 Sobic002G049300 Sobic002G049300 Sobic008G021100--Sobic002G049300 Sobic008G135000 Sobic008G135000 Sobic008G021100--Sobic008G135000 Sobic009G233400 Sobic009G233400 Sobic008G021100--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic008G021100--Sobic001G085400 Sobic008G021100--Sobic001G510800 Sobic001G334300 Sobic001G334300 Sobic008G021100--Sobic001G334300 Sobic010G005300--Sobic001G510800 Sobic010G005300--Sobic001G058900 Sobic002G415500 Sobic002G415500 Sobic010G005300--Sobic002G415500 Sobic010G005300--Sobic009G233400 Sobic008G100000 Sobic008G100000 Sobic010G005300--Sobic008G100000 Sobic001G039400 Sobic001G039400 Sobic010G005300--Sobic001G039400 Sobic010G005300--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic010G005300--Sobic002G304900 Sobic010G005300--Sobic001G225700 Sobic001G202400--Sobic003G015400 Sobic001G202400--Sobic007G034400 Sobic001G202400--Sobic008G103900 Sobic001G543300 Sobic001G543300 Sobic001G202400--Sobic001G543300 Sobic001G081400 Sobic001G081400 Sobic001G202400--Sobic001G081400 Sobic009G207100 Sobic009G207100 Sobic001G202400--Sobic009G207100 Sobic002G007100 Sobic002G007100 Sobic001G202400--Sobic002G007100 Sobic003G182400 Sobic003G182400 Sobic001G202400--Sobic003G182400 Sobic009G168000 Sobic009G168000 Sobic001G202400--Sobic009G168000 Sobic004G293100--Sobic003G015400 Sobic002G263100 Sobic002G263100 Sobic004G293100--Sobic002G263100 Sobic009G024500 Sobic009G024500 Sobic004G293100--Sobic009G024500 Sobic004G151400 Sobic004G151400 Sobic004G293100--Sobic004G151400 Sobic003G305100 Sobic003G305100 Sobic004G293100--Sobic003G305100 Sobic004G293100--Sobic008G021100 Sobic007G177200 Sobic007G177200 Sobic004G293100--Sobic007G177200 Sobic007G134900 Sobic007G134900 Sobic004G293100--Sobic007G134900 Sobic008G127500 Sobic008G127500 Sobic004G293100--Sobic008G127500 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G510800--Sobic001G058900 Sobic001G510800--Sobic008G100000 Sobic008G108601 Sobic008G108601 Sobic001G510800--Sobic008G108601 Sobic001G510800--Sobic001G225700 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic009G227400 Sobic009G227400 Sobic001G510800--Sobic009G227400 Sobic001G428100 Sobic001G428100 Sobic006G281200--Sobic001G428100 Sobic003G003000 Sobic003G003000 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic001G404100 Sobic001G404100 Sobic006G281200--Sobic001G404100 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic001G304400 Sobic001G304400 Sobic009G062000--Sobic001G304400 Sobic001G095632 Sobic001G095632 Sobic009G062000--Sobic001G095632 Sobic008G129400 Sobic008G129400 Sobic009G062000--Sobic008G129400 Sobic001G432000 Sobic001G432000 Sobic009G062000--Sobic001G432000 Sobic010G018400 Sobic010G018400 Sobic009G062000--Sobic010G018400 Sobic004G351500 Sobic004G351500 Sobic009G062000--Sobic004G351500 Sobic009G062000--Sobic003G305100 Sobic001G286200 Sobic001G286200 Sobic009G062000--Sobic001G286200 Sobic002G073800 Sobic002G073800 Sobic009G062000--Sobic002G073800
Octagon: transcription factors


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