Gene annotation
Transcriptome id Sobic.002G007100.2,Sobic.002G007100.1
Synonym ELF5A-1, ATELF5A-1, EIF-5A, EIF5A, Sb02g000830
Functional annotation eukaryotic translation initiation factor 5A, putative, expressed
UniProt A0A1B6Q8L9
Pfam PF01287
Panther DB PTHR11673 PTHR11673:SF8
NCBI CDD KOG3271; Translation initiation factor 5A (eIF-5A)
KEGG Orthology K03263; translation initiation factor 5A
Gene Ontology GO:0006452; translational frameshifting GO:0003746translation elongation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G13950 : eukaryotic elongation factor 5A-1
RAP-DB (Rice) LOC_Os07g02210.1,LOC_Os07g02210.2 : eukaryotic translation initiation factor 5A, putative, expressed
MaizeGDB (Corn) Zm00025a016255 , Zm00025a015095
Brachypodium KQK21172
Barley HORVU2Hr1G063210.4 , HORVU2Hr1G063210.2 , HORVU2Hr1G063210.3 , HORVU2Hr1G063210.1 , HORVU5Hr1G028360.4 , HORVU5Hr1G028360.5 , HORVU5Hr1G028360.1 , HORVU5Hr1G028360.2 , HORVU5Hr1G028360.3
Wheat TraesCS5A02G104800 , TraesCS2D02G261500 , TraesCS2A02G262500 , TraesCS5D02G116200 , TraesCS5D02G116200 , TraesCS2B02G279600 , TraesCS5B02G108600
Populus -


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cDNA sequences
Sobic.002G007100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
2 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
4 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
5 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
6 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
7 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
8 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
9 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
10 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
11 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
12 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
13 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
14 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
16 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
17 Sobic.008G094600 - -
18 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
19 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
20 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e


Gene co-expression network
sample Sobic002G007100 Sobic002G007100 Sobic005G157200 Sobic005G157200 Sobic002G007100--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic002G007100--Sobic003G025200 Sobic010G029400 Sobic010G029400 Sobic002G007100--Sobic010G029400 Sobic008G058300 Sobic008G058300 Sobic002G007100--Sobic008G058300 Sobic002G406500 Sobic002G406500 Sobic002G007100--Sobic002G406500 Sobic004G196400 Sobic004G196400 Sobic002G007100--Sobic004G196400 Sobic006G201500 Sobic006G201500 Sobic002G007100--Sobic006G201500 Sobic003G280700 Sobic003G280700 Sobic002G007100--Sobic003G280700 Sobic006G081100 Sobic006G081100 Sobic002G007100--Sobic006G081100 Sobic005G157200--Sobic008G058300 Sobic001G331900 Sobic001G331900 Sobic005G157200--Sobic001G331900 Sobic001G377800 Sobic001G377800 Sobic005G157200--Sobic001G377800 Sobic005G157200--Sobic003G025200 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic005G157200--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic005G157200--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic005G157200--Sobic001G529000 Sobic003G025200--Sobic001G377800 Sobic003G025200--Sobic006G081100 Sobic001G085400 Sobic001G085400 Sobic003G025200--Sobic001G085400 Sobic003G025200--Sobic002G406500 Sobic001G058900 Sobic001G058900 Sobic003G025200--Sobic001G058900 Sobic003G025200--Sobic006G201500 Sobic002G049300 Sobic002G049300 Sobic003G025200--Sobic002G049300 Sobic003G025200--Sobic008G058300 Sobic002G115000 Sobic002G115000 Sobic003G025200--Sobic002G115000 Sobic008G132800 Sobic008G132800 Sobic010G029400--Sobic008G132800 Sobic002G078400 Sobic002G078400 Sobic010G029400--Sobic002G078400 Sobic010G029400--Sobic003G025200 Sobic010G029400--Sobic002G406500 Sobic010G029400--Sobic002G115000 Sobic010G029400--Sobic005G157200 Sobic010G029400--Sobic008G058300 Sobic010G029400--Sobic001G377800 Sobic009G016201 Sobic009G016201 Sobic010G029400--Sobic009G016201 Sobic008G058300--Sobic005G157200 Sobic008G058300--Sobic003G025200 Sobic008G058300--Sobic001G331900 Sobic006G052400 Sobic006G052400 Sobic008G058300--Sobic006G052400 Sobic004G300900 Sobic004G300900 Sobic008G058300--Sobic004G300900 Sobic008G058300--Sobic010G029400 Sobic004G002350 Sobic004G002350 Sobic008G058300--Sobic004G002350 Sobic008G058300--Sobic002G078400 Sobic008G058300--Sobic001G377800 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G406500--Sobic002G115000 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic006G147000 Sobic006G147000 Sobic004G196400--Sobic006G147000 Sobic001G533500 Sobic001G533500 Sobic004G196400--Sobic001G533500 Sobic006G211200 Sobic006G211200 Sobic004G196400--Sobic006G211200 Sobic007G019000 Sobic007G019000 Sobic004G196400--Sobic007G019000 Sobic007G178600 Sobic007G178600 Sobic004G196400--Sobic007G178600 Sobic001G537200 Sobic001G537200 Sobic004G196400--Sobic001G537200 Sobic004G252100 Sobic004G252100 Sobic004G196400--Sobic004G252100 Sobic007G190800 Sobic007G190800 Sobic004G196400--Sobic007G190800 Sobic002G286900 Sobic002G286900 Sobic004G196400--Sobic002G286900 Sobic006G201500--Sobic002G115000 Sobic006G201500--Sobic001G085400 Sobic009G233400 Sobic009G233400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic006G201500--Sobic007G019000 Sobic010G069400 Sobic010G069400 Sobic006G201500--Sobic010G069400 Sobic006G201500--Sobic001G058900 Sobic008G098800 Sobic008G098800 Sobic006G201500--Sobic008G098800 Sobic003G249700 Sobic003G249700 Sobic006G201500--Sobic003G249700 Sobic003G280700--Sobic002G049300 Sobic001G011200 Sobic001G011200 Sobic003G280700--Sobic001G011200 Sobic003G280700--Sobic006G081100 Sobic005G050500 Sobic005G050500 Sobic003G280700--Sobic005G050500 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic003G280700--Sobic002G056200 Sobic009G022400 Sobic009G022400 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500 Sobic006G081100--Sobic003G249700 Sobic008G108601 Sobic008G108601 Sobic006G081100--Sobic008G108601 Sobic005G019700 Sobic005G019700 Sobic006G081100--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic006G081100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic006G081100--Sobic006G221200 Sobic006G081100--Sobic002G047600 Sobic009G050300 Sobic009G050300 Sobic006G081100--Sobic009G050300 Sobic010G230700 Sobic010G230700 Sobic006G081100--Sobic010G230700 Sobic001G225700 Sobic001G225700 Sobic006G081100--Sobic001G225700
Octagon: transcription factors


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