Gene annotation
Transcriptome id Sobic.009G114400.1
Synonym Sb09g018190
Functional annotation expressed protein
UniProt C5YWW5
Pfam PF09420
Panther DB PTHR13243
NCBI CDD KOG4771; Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis
KEGG Orthology K14839; nucleolar protein 16
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02870 : -
RAP-DB (Rice) LOC_Os05g30420.1 : expressed protein
MaizeGDB (Corn) Zm00025a043344
Brachypodium KQK06661
Barley HORVU1Hr1G058480.2 , HORVU1Hr1G058480.3
Wheat TraesCS1A02G228900 , TraesCS1B02G245100 , TraesCS1D02G233100
Populus -


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cDNA sequences
Sobic.009G114400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
2 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
3 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
4 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
5 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
6 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
7 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
8 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
9 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
10 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
11 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
12 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
13 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
14 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
15 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
17 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
18 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
19 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
20 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e


Gene co-expression network
sample Sobic009G114400 Sobic009G114400 Sobic001G225700 Sobic001G225700 Sobic009G114400--Sobic001G225700 Sobic002G049300 Sobic002G049300 Sobic009G114400--Sobic002G049300 Sobic001G085400 Sobic001G085400 Sobic009G114400--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic009G114400--Sobic007G178600 Sobic009G227400 Sobic009G227400 Sobic009G114400--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic009G114400--Sobic009G144300 Sobic003G249700 Sobic003G249700 Sobic009G114400--Sobic003G249700 Sobic006G221200 Sobic006G221200 Sobic009G114400--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic009G114400--Sobic006G081100 Sobic001G225700--Sobic003G249700 Sobic001G225700--Sobic006G081100 Sobic008G108601 Sobic008G108601 Sobic001G225700--Sobic008G108601 Sobic001G225700--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic001G225700--Sobic002G047600 Sobic002G286900 Sobic002G286900 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic002G115000 Sobic002G115000 Sobic001G225700--Sobic002G115000 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G049300--Sobic002G286900 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic003G346600 Sobic003G346600 Sobic007G178600--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic007G178600--Sobic009G050300 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic001G334300 Sobic001G334300 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G233400 Sobic009G233400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic009G144300--Sobic002G255100 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic004G104100 Sobic004G104100 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic010G230700 Sobic010G230700 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic006G221200--Sobic007G019400 Sobic001G091801 Sobic001G091801 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic006G221200--Sobic005G019700 Sobic006G081100--Sobic003G249700 Sobic006G081100--Sobic008G108601 Sobic006G081100--Sobic005G019700 Sobic006G081100--Sobic001G091801 Sobic006G081100--Sobic006G221200 Sobic006G081100--Sobic002G047600 Sobic006G081100--Sobic009G050300 Sobic006G081100--Sobic010G230700 Sobic006G081100--Sobic001G225700
Octagon: transcription factors


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