Gene annotation
Transcriptome id Sobic.008G103900.1
Synonym Sb08g015580, GR-RBP3
Functional annotation glycine-rich RNA-binding protein 7, putative, expressed
UniProt C5YNX7
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G61030 : glycine-rich RNA-binding protein 3
RAP-DB (Rice) LOC_Os12g31800.1 : glycine-rich RNA-binding protein 7, putative, expressed
MaizeGDB (Corn) Zm00025a025590 , Zm00025a054197 , Zm00025a048686
Brachypodium -
Barley HORVU3Hr1G094330.2 , HORVU3Hr1G094330.3 , HORVU3Hr1G094330.1
Wheat -
Populus -


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cDNA sequences
Sobic.008G103900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
2 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
3 Sobic.001G202400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
4 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
5 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
6 Sobic.002G179000 methyltransferase, putative, expressed K11434: type I protein arginine methyltransferase
7 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
8 Sobic.003G015400 ribosomal protein S6 family protein, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
9 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
10 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
11 Sobic.006G281200 csAtPR5, putative, expressed -
12 Sobic.001G132900 expressed protein -
13 Sobic.001G543300 dehydrogenase, putative, expressed -
14 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
15 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
16 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
17 Sobic.004G124100 EMB1303, putative, expressed -
18 Sobic.003G182400 DNA-damage-repair/toleration protein DRT102, putative, expressed -
19 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
20 Sobic.004G177100 RNA methyltransferase protein, putative, expressed K15430: TRM11, tRNA (guanine10-N2)-methyltransferase


Gene co-expression network
sample Sobic008G103900 Sobic008G103900 Sobic007G034400 Sobic007G034400 Sobic008G103900--Sobic007G034400 Sobic010G013900 Sobic010G013900 Sobic008G103900--Sobic010G013900 Sobic001G202400 Sobic001G202400 Sobic008G103900--Sobic001G202400 Sobic004G248900 Sobic004G248900 Sobic008G103900--Sobic004G248900 Sobic009G130400 Sobic009G130400 Sobic008G103900--Sobic009G130400 Sobic002G179000 Sobic002G179000 Sobic008G103900--Sobic002G179000 Sobic010G018000 Sobic010G018000 Sobic008G103900--Sobic010G018000 Sobic003G015400 Sobic003G015400 Sobic008G103900--Sobic003G015400 Sobic007G143000 Sobic007G143000 Sobic008G103900--Sobic007G143000 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic005G164700 Sobic005G164700 Sobic007G034400--Sobic005G164700 Sobic007G034400--Sobic008G103900 Sobic007G034400--Sobic003G015400 Sobic001G058900 Sobic001G058900 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic002G045100 Sobic002G045100 Sobic007G034400--Sobic002G045100 Sobic001G025600 Sobic001G025600 Sobic010G013900--Sobic001G025600 Sobic002G371100 Sobic002G371100 Sobic010G013900--Sobic002G371100 Sobic005G027300 Sobic005G027300 Sobic010G013900--Sobic005G027300 Sobic001G481700 Sobic001G481700 Sobic010G013900--Sobic001G481700 Sobic010G013900--Sobic004G248900 Sobic004G002350 Sobic004G002350 Sobic010G013900--Sobic004G002350 Sobic003G196800 Sobic003G196800 Sobic010G013900--Sobic003G196800 Sobic001G117400 Sobic001G117400 Sobic010G013900--Sobic001G117400 Sobic003G028100 Sobic003G028100 Sobic010G013900--Sobic003G028100 Sobic001G202400--Sobic003G015400 Sobic001G202400--Sobic007G034400 Sobic001G202400--Sobic008G103900 Sobic001G543300 Sobic001G543300 Sobic001G202400--Sobic001G543300 Sobic001G081400 Sobic001G081400 Sobic001G202400--Sobic001G081400 Sobic009G207100 Sobic009G207100 Sobic001G202400--Sobic009G207100 Sobic002G007100 Sobic002G007100 Sobic001G202400--Sobic002G007100 Sobic003G182400 Sobic003G182400 Sobic001G202400--Sobic003G182400 Sobic009G168000 Sobic009G168000 Sobic001G202400--Sobic009G168000 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic004G248900--Sobic007G143000 Sobic001G060300 Sobic001G060300 Sobic004G248900--Sobic001G060300 Sobic004G248900--Sobic010G013900 Sobic004G248900--Sobic001G117400 Sobic003G326900 Sobic003G326900 Sobic004G248900--Sobic003G326900 Sobic001G404100 Sobic001G404100 Sobic004G248900--Sobic001G404100 Sobic009G130400--Sobic001G404100 Sobic001G096100 Sobic001G096100 Sobic009G130400--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic009G130400--Sobic006G281200 Sobic008G058300 Sobic008G058300 Sobic009G130400--Sobic008G058300 Sobic009G130400--Sobic010G013900 Sobic009G130400--Sobic003G028100 Sobic001G502200 Sobic001G502200 Sobic009G130400--Sobic001G502200 Sobic002G341800 Sobic002G341800 Sobic009G130400--Sobic002G341800 Sobic009G130400--Sobic004G248900 Sobic002G179000--Sobic008G103900 Sobic001G022600 Sobic001G022600 Sobic002G179000--Sobic001G022600 Sobic007G168200 Sobic007G168200 Sobic002G179000--Sobic007G168200 Sobic006G157000 Sobic006G157000 Sobic002G179000--Sobic006G157000 Sobic010G039200 Sobic010G039200 Sobic002G179000--Sobic010G039200 Sobic001G224200 Sobic001G224200 Sobic002G179000--Sobic001G224200 Sobic008G171800 Sobic008G171800 Sobic002G179000--Sobic008G171800 Sobic001G069600 Sobic001G069600 Sobic002G179000--Sobic001G069600 Sobic009G071700 Sobic009G071700 Sobic002G179000--Sobic009G071700 Sobic010G018000--Sobic003G326900 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic010G018000--Sobic007G034400 Sobic010G018000--Sobic007G143000 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic003G015400--Sobic007G034400 Sobic008G021100 Sobic008G021100 Sobic003G015400--Sobic008G021100 Sobic010G005300 Sobic010G005300 Sobic003G015400--Sobic010G005300 Sobic003G015400--Sobic001G202400 Sobic004G293100 Sobic004G293100 Sobic003G015400--Sobic004G293100 Sobic003G015400--Sobic001G510800 Sobic003G015400--Sobic006G281200 Sobic003G015400--Sobic001G058900 Sobic009G062000 Sobic009G062000 Sobic003G015400--Sobic009G062000 Sobic007G143000--Sobic002G045100 Sobic001G214900 Sobic001G214900 Sobic007G143000--Sobic001G214900 Sobic003G160900 Sobic003G160900 Sobic007G143000--Sobic003G160900 Sobic007G143000--Sobic004G248900 Sobic006G243400 Sobic006G243400 Sobic007G143000--Sobic006G243400 Sobic007G143000--Sobic010G018000 Sobic007G143000--Sobic007G034400 Sobic007G143000--Sobic003G326900 Sobic007G143000--Sobic005G164700
Octagon: transcription factors


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