Gene annotation
Transcriptome id Sobic.004G177100.1
Synonym Sb04g022710
Functional annotation RNA methyltransferase protein, putative, expressed
UniProt C5XUT0
Pfam PF01170
Panther DB PTHR13370 PTHR13370:SF3
NCBI CDD -
KEGG Orthology K15430; TRM11, tRNA (guanine10-N2)-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26410 : methyltransferases;nucleic acid binding
RAP-DB (Rice) LOC_Os02g35060.1 : RNA methyltransferase protein, putative, expressed
MaizeGDB (Corn) Zm00025a020671
Brachypodium KQJ99887
Barley HORVU3Hr1G023160.19 , HORVU3Hr1G023160.18 , HORVU3Hr1G023160.15 , HORVU3Hr1G023160.14 , HORVU3Hr1G023160.17 , HORVU3Hr1G023160.16 , HORVU3Hr1G023160.11 , HORVU3Hr1G023160.10 , HORVU3Hr1G023160.13 , HORVU3Hr1G023160.12 , HORVU3Hr1G023160.9 , HORVU3Hr1G023160.8 , HORVU3Hr1G023160.1 , HORVU3Hr1G023160.3 , HORVU3Hr1G023160.2 , HORVU3Hr1G023160.5 , HORVU3Hr1G023160.4 , HORVU3Hr1G023160.7 , HORVU3Hr1G023160.6 , HORVU3Hr1G023160.20 , HORVU3Hr1G023160.21 , HORVU3Hr1G023160.22 , HORVU2Hr1G108320.5 , HORVU2Hr1G108320.2 , HORVU2Hr1G108320.8 , HORVU2Hr1G108320.6 , HORVU2Hr1G108320.7 , HORVU2Hr1G108320.4 , HORVU3Hr1G023160.23 , HORVU3Hr1G023160.24 , HORVU2Hr1G108320.3 , HORVU2Hr1G108320.1
Wheat TraesCS2A02G482700 , TraesCS3B02G143600 , TraesCS3A02G124500 , TraesCS2B02G509300 , TraesCS2D02G482800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
2 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
3 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
4 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
5 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
6 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.008G133500 diaminopimelate epimerase, chloroplast precursor, putative, expressed K01778: diaminopimelate epimerase
8 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
9 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
10 Sobic.007G188600 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
11 Sobic.008G004100 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
12 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
13 Sobic.010G212200 synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
14 Sobic.006G242300 - -
15 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
16 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
17 Sobic.003G216700 acetyltransferase, GNAT family, putative, expressed -
18 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
19 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
20 Sobic.001G202400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component


Gene co-expression network
sample Sobic004G177100 Sobic004G177100 Sobic001G091900 Sobic001G091900 Sobic004G177100--Sobic001G091900 Sobic008G103900 Sobic008G103900 Sobic004G177100--Sobic008G103900 Sobic007G034400 Sobic007G034400 Sobic004G177100--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic004G177100--Sobic007G143000 Sobic002G392800 Sobic002G392800 Sobic004G177100--Sobic002G392800 Sobic001G057200 Sobic001G057200 Sobic004G177100--Sobic001G057200 Sobic008G133500 Sobic008G133500 Sobic004G177100--Sobic008G133500 Sobic006G281500 Sobic006G281500 Sobic004G177100--Sobic006G281500 Sobic006G243400 Sobic006G243400 Sobic004G177100--Sobic006G243400 Sobic004G326600 Sobic004G326600 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G481700 Sobic001G481700 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic002G341800 Sobic002G341800 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic001G091900--Sobic001G458700 Sobic008G103900--Sobic007G034400 Sobic010G013900 Sobic010G013900 Sobic008G103900--Sobic010G013900 Sobic001G202400 Sobic001G202400 Sobic008G103900--Sobic001G202400 Sobic004G248900 Sobic004G248900 Sobic008G103900--Sobic004G248900 Sobic009G130400 Sobic009G130400 Sobic008G103900--Sobic009G130400 Sobic002G179000 Sobic002G179000 Sobic008G103900--Sobic002G179000 Sobic010G018000 Sobic010G018000 Sobic008G103900--Sobic010G018000 Sobic003G015400 Sobic003G015400 Sobic008G103900--Sobic003G015400 Sobic008G103900--Sobic007G143000 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic005G164700 Sobic005G164700 Sobic007G034400--Sobic005G164700 Sobic007G034400--Sobic008G103900 Sobic007G034400--Sobic003G015400 Sobic001G058900 Sobic001G058900 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic002G045100 Sobic002G045100 Sobic007G034400--Sobic002G045100 Sobic007G143000--Sobic002G045100 Sobic001G214900 Sobic001G214900 Sobic007G143000--Sobic001G214900 Sobic007G143000--Sobic003G160900 Sobic007G143000--Sobic004G248900 Sobic007G143000--Sobic006G243400 Sobic007G143000--Sobic010G018000 Sobic007G143000--Sobic007G034400 Sobic003G326900 Sobic003G326900 Sobic007G143000--Sobic003G326900 Sobic007G143000--Sobic005G164700 Sobic001G242800 Sobic001G242800 Sobic002G392800--Sobic001G242800 Sobic001G112700 Sobic001G112700 Sobic002G392800--Sobic001G112700 Sobic008G004100 Sobic008G004100 Sobic002G392800--Sobic008G004100 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700 Sobic010G146600 Sobic010G146600 Sobic001G057200--Sobic010G146600 Sobic002G317300 Sobic002G317300 Sobic001G057200--Sobic002G317300 Sobic002G092300 Sobic002G092300 Sobic001G057200--Sobic002G092300 Sobic010G249300 Sobic010G249300 Sobic001G057200--Sobic010G249300 Sobic003G372000 Sobic003G372000 Sobic001G057200--Sobic003G372000 Sobic006G047100 Sobic006G047100 Sobic001G057200--Sobic006G047100 Sobic005G044800 Sobic005G044800 Sobic001G057200--Sobic005G044800 Sobic001G057200--Sobic002G143000 Sobic006G264500 Sobic006G264500 Sobic001G057200--Sobic006G264500 Sobic008G185900 Sobic008G185900 Sobic008G133500--Sobic008G185900 Sobic008G133500--Sobic004G177100 Sobic006G179700 Sobic006G179700 Sobic008G133500--Sobic006G179700 Sobic009G013900 Sobic009G013900 Sobic008G133500--Sobic009G013900 Sobic006G242300 Sobic006G242300 Sobic008G133500--Sobic006G242300 Sobic008G171800 Sobic008G171800 Sobic008G133500--Sobic008G171800 Sobic006G177300 Sobic006G177300 Sobic008G133500--Sobic006G177300 Sobic001G041200 Sobic001G041200 Sobic008G133500--Sobic001G041200 Sobic003G128000 Sobic003G128000 Sobic008G133500--Sobic003G128000 Sobic001G263000 Sobic001G263000 Sobic006G281500--Sobic001G263000 Sobic009G227900 Sobic009G227900 Sobic006G281500--Sobic009G227900 Sobic009G081500 Sobic009G081500 Sobic006G281500--Sobic009G081500 Sobic006G281500--Sobic002G317300 Sobic005G105500 Sobic005G105500 Sobic006G281500--Sobic005G105500 Sobic002G259400 Sobic002G259400 Sobic006G281500--Sobic002G259400 Sobic007G188600 Sobic007G188600 Sobic006G281500--Sobic007G188600 Sobic003G119400 Sobic003G119400 Sobic006G281500--Sobic003G119400 Sobic010G085200 Sobic010G085200 Sobic006G281500--Sobic010G085200 Sobic006G243400--Sobic007G143000 Sobic006G243400--Sobic001G214900 Sobic006G243400--Sobic003G160900 Sobic006G157000 Sobic006G157000 Sobic006G243400--Sobic006G157000 Sobic006G243400--Sobic010G018000 Sobic006G243400--Sobic001G481700 Sobic006G017100 Sobic006G017100 Sobic006G243400--Sobic006G017100 Sobic010G134100 Sobic010G134100 Sobic006G243400--Sobic010G134100 Sobic010G125100 Sobic010G125100 Sobic006G243400--Sobic010G125100
Octagon: transcription factors


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